Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16a03f
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14745-13|AAR25658.1|  210|Caenorhabditis elegans Hypothetical p...   136   2e-32
AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical ...    61   1e-09
AL161712-16|CAC35892.1|  329|Caenorhabditis elegans Hypothetical...    55   5e-08

>L14745-13|AAR25658.1|  210|Caenorhabditis elegans Hypothetical
           protein C02F5.13 protein.
          Length = 210

 Score =  136 bits (329), Expect = 2e-32
 Identities = 65/155 (41%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
 Frame = +3

Query: 204 PLGPLVKCSYLPLEFLDCDEPIDHKG-NHTARQATGHG------CVKFGGVRYDQVEKAK 362
           PLGP+V+C +L   F+ C++P+   G   T +Q           C+K GG R + VE   
Sbjct: 56  PLGPVVECRFLENSFILCEDPVPLYGPGQTGQQPANESFRNEGKCLKMGGYRAEDVEFTN 115

Query: 363 VQCKALDGIECYGSRSFPRDGFPCVRYSGHYFTTTLIYSILLGFLGMDRFCLGQXXXXXX 542
           V+C+ L  IEC+G R+F +   PC+ Y+GHYF TTL+YSI LG + +DRFCLG       
Sbjct: 116 VKCRVLPCIECHGPRTFTKST-PCIIYNGHYFLTTLLYSIFLGVVAVDRFCLGYSAMAVG 174

Query: 543 XXXXXXXXXIWWIVDVVLLITNSLHPEDGSNWNPY 647
                    IWWIVD+ LL+   L P D S+W PY
Sbjct: 175 KLMTLGGFGIWWIVDIFLLVLGVLGPADDSSWEPY 209


>AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical
           protein C41D11.9 protein.
          Length = 195

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 32/89 (35%), Positives = 45/89 (50%)
 Frame = +3

Query: 366 QCKALDGIECYGSRSFPRDGFPCVRYSGHYFTTTLIYSILLGFLGMDRFCLGQXXXXXXX 545
           +C A   + C G R+F +   PC   SG+ +T T+I S++LG  G DRF LG        
Sbjct: 105 KCSAHSSVICMGQRNFYKR-IPCNWSSGYSWTKTMILSVVLGGFGADRFYLGLWKSAIGK 163

Query: 546 XXXXXXXXIWWIVDVVLLITNSLHPEDGS 632
                   +W +VDVVL+    + P DGS
Sbjct: 164 LFSFGGLGVWTLVDVVLIAVGYIKPYDGS 192


>AL161712-16|CAC35892.1|  329|Caenorhabditis elegans Hypothetical
           protein Y66D12A.21 protein.
          Length = 329

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
 Frame = +3

Query: 360 KVQCKALDGIECYGSRSFP---RDGFPCVRYSGHY-FTTTLIYSILLGFLGMDRFCLGQX 527
           +V C+  + I+C G   F    R       Y  H  +TTT++ SI LGF G+DR  LG  
Sbjct: 54  QVMCETAEHIKCVGKDQFGIFNRTVPSACHYGAHVSYTTTVLLSIFLGFFGIDRIYLGYY 113

Query: 528 XXXXXXXXXXXXXXIWWIVDVVLLITNSLHPEDGS 632
                         ++W+VD++L+    L P DG+
Sbjct: 114 ALGLIKMFSLGGLFVFWLVDIILISLQLLGPADGT 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,535,450
Number of Sequences: 27780
Number of extensions: 372946
Number of successful extensions: 930
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)