Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16a03f
(770 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 23 3.1
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 23 4.2
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 23 4.2
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 22 7.3
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 22 7.3
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 22 7.3
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 22 7.3
AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein. 22 7.3
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 22 7.3
AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta... 22 7.3
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 7.3
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 21 9.6
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 21 9.6
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 21 9.6
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 21 9.6
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 23.0 bits (47), Expect = 3.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 421 TVSRVCDTLDITLRP 465
T+SR+ D DI LRP
Sbjct: 40 TISRILDGYDIRLRP 54
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 22.6 bits (46), Expect = 4.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -1
Query: 86 IVFKCISTNRTHYVNITFYV 27
+V+KC+S N Y T V
Sbjct: 167 VVYKCVSDNGESYAKFTISV 186
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 22.6 bits (46), Expect = 4.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 722 YSFNYNNNESISFFDEIPYIQVLLNIWIPI 633
Y+ NYNNN +++ I Q+ + + +PI
Sbjct: 343 YNNNYNNNCKKLYYNIINIEQIPVPVPVPI 372
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 7.3
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 5/23 (21%)
Frame = -1
Query: 722 YSFNYNNN-----ESISFFDEIP 669
Y +NYNNN +I++ ++IP
Sbjct: 96 YKYNYNNNCKKLYYNINYIEQIP 118
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 7.3
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 722 YSFNYNNNESISFFDEIPY-IQVLLNIWIPITTIF 621
Y +NYNNN + ++ Y I + I IP+ +
Sbjct: 96 YKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPVYY 130
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 7.3
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 722 YSFNYNNNESISFFDEIPY-IQVLLNIWIPITTIF 621
Y +NYNNN + ++ Y I + I IP+ +
Sbjct: 96 YKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPVYY 130
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 7.3
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 722 YSFNYNNNESISFFDEIPY-IQVLLNIWIPITTIF 621
Y +NYNNN + ++ Y I + I IP+ +
Sbjct: 96 YKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPVYY 130
>AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein.
Length = 145
Score = 21.8 bits (44), Expect = 7.3
Identities = 9/34 (26%), Positives = 15/34 (44%)
Frame = +3
Query: 294 RQATGHGCVKFGGVRYDQVEKAKVQCKALDGIEC 395
R T H C G++ E ++ K + +EC
Sbjct: 102 RHITLHHCYDADGIKLMNEENGVMEIKIREPVEC 135
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.8 bits (44), Expect = 7.3
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 713 NYNNNESISFFDEIPYIQVLLNI-WIPI 633
NYNNN ++ ++ Y ++NI IP+
Sbjct: 332 NYNNNNYNNYNKKLYYKNYIINIEQIPV 359
>AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta
protein precursor protein.
Length = 145
Score = 21.8 bits (44), Expect = 7.3
Identities = 9/34 (26%), Positives = 15/34 (44%)
Frame = +3
Query: 294 RQATGHGCVKFGGVRYDQVEKAKVQCKALDGIEC 395
R T H C G++ E ++ K + +EC
Sbjct: 102 RHITLHHCYDADGIKLMNEENGVMEIKIREPVEC 135
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 7.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 643 GFQLLPSSGCRLLVINNTTSTIHQIPSPPRVKSFPT 536
G QL PS+G + I N ++ P P S PT
Sbjct: 406 GGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPT 441
Score = 21.4 bits (43), Expect = 9.6
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = +3
Query: 258 DEPIDHKGNHTARQATGHGCVKFGG 332
++P+D N GHG K+ G
Sbjct: 263 EKPLDVSSNDKVHPLYGHGVCKWPG 287
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 9.6
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -1
Query: 722 YSFNYNNNE-SISFFDEIPYIQ 660
Y +NYNNN + + I YI+
Sbjct: 95 YKYNYNNNNYNKKLYYNINYIE 116
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 9.6
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -1
Query: 722 YSFNYNNNE-SISFFDEIPYIQ 660
Y +NYNNN + + I YI+
Sbjct: 95 YKYNYNNNNYNKKLYYNINYIE 116
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 9.6
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -1
Query: 722 YSFNYNNNE-SISFFDEIPYIQ 660
Y +NYNNN + + I YI+
Sbjct: 95 YKYNYNNNNYNKKLYYNINYIE 116
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 9.6
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -1
Query: 722 YSFNYNNNE-SISFFDEIPYIQ 660
Y +NYNNN + + I YI+
Sbjct: 95 YKYNYNNNNYNKKLYYNINYIE 116
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,986
Number of Sequences: 438
Number of extensions: 5280
Number of successful extensions: 26
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -