Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15p13f
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    50   3e-07
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    49   6e-07
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    48   1e-06
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    41   2e-04
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ...    39   7e-04
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    38   0.002
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    37   0.002
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         34   0.014
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom...    33   0.033
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    31   0.13 
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    30   0.23 
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce...    27   2.2  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    27   2.2  
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    26   3.8  
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...    26   3.8  
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy...    26   5.0  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    25   8.7  

>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
 Frame = +3

Query: 216 STHGSLRMMFRLKFIRSLMNTKMSKTPNFVRANHNDRLKGKVAIVTASTEGIGYAIAKRL 395
           S  G L  +     + +L       TP +   +  D L GKVA+VT S+ GIGY  A  L
Sbjct: 4   SFQGLLNRVNESAIVNTLKEYTGLNTPKWTFNDIPD-LTGKVALVTGSSGGIGYVTALEL 62

Query: 396 GHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVANSDHRKKLFEVAKS---KFGG 566
             +GA V ++ R E+  +  +K +  D +    I     +    + +++ A+S   K   
Sbjct: 63  ARKGAKVYLAGRNEEKYQKVMKQIH-DEVRHSKIRFLRLDLLDFESVYQAAESFIAKEEK 121

Query: 567 LDILVSNAAV-NPP 605
           L ILV+NA + NPP
Sbjct: 122 LHILVNNAGIMNPP 135


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 48.8 bits (111), Expect = 6e-07
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
 Frame = +3

Query: 327 LKGKVAIVTASTEGIGYAIAKRLGHEGASV-VISSRKEDNVENAVKSLRSDGITVEGIVC 503
           LKGK  ++T  + GIG++IAK     G++V ++  R +  +E A +     G+  +   C
Sbjct: 7   LKGKTTLITGGSGGIGFSIAKAFAAAGSNVGLLYGRNKKALEYAAELRDKHGVQAKAYSC 66

Query: 504 HVANSDHRKKLFEVAKSKFGG-LDILVSNAAVNPP 605
            + N     +    A  + GG LD++++NA +  P
Sbjct: 67  PIENRSAVIETTNQAVEELGGRLDVMIANAGIAIP 101


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 26/90 (28%), Positives = 45/90 (50%)
 Frame = +3

Query: 327 LKGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCH 506
           LKGK  +V  + +GIG++IA      G +V+I+    D  E A K     G+ V  +   
Sbjct: 19  LKGKNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTTDPTEKAKKLAEETGVQVHTLKID 78

Query: 507 VANSDHRKKLFEVAKSKFGGLDILVSNAAV 596
           ++ SD  +   E  +  F  + ++V+NA +
Sbjct: 79  ISRSDTVEAGVEEIQKIFKEIHVVVANAGM 108


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
 Frame = +3

Query: 324 RLKGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVC 503
           +L  K  ++T    GIG A A     EG+ +VIS   E+  +  V     D I  EG  C
Sbjct: 39  KLAEKKTLLTGGDSGIGKAAAVMFAREGSDLVISCLPEERDDAEV---TRDLIEREGRNC 95

Query: 504 HV-----ANSDHRKKLFEVAKSKFGGLDILVSNAA 593
            +       SD+ + L + A  K G +D+LV+N A
Sbjct: 96  WIWEGKLDKSDNCRDLVDFALKKLGWIDVLVNNIA 130


>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 261

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 24/90 (26%), Positives = 38/90 (42%)
 Frame = +3

Query: 327 LKGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCH 506
           LKGK A+V     GIG+AI       GA+  I        + A +  +++G+      C 
Sbjct: 19  LKGKNAVVFGGARGIGHAICSVFAEAGANAFIVYNTTPGEKAAKEIAQANGVKTYTCKCD 78

Query: 507 VANSDHRKKLFEVAKSKFGGLDILVSNAAV 596
           V      +  F   +  F  +DI+V N  +
Sbjct: 79  VTIPKEVEHAFAEIQKVFDTIDIVVPNNGI 108


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = +3

Query: 330 KGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRS 473
           KG  A+VT +T+GIG   A +L   G +VV+ SR ++ ++   K L +
Sbjct: 56  KGYWAVVTGATDGIGKEYATQLAMSGFNVVLISRTQEKLDALAKELET 103


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
 Frame = +3

Query: 345 IVTASTEGIGYAIAKRLGHEGASVVISSRKEDNV---ENAVKSLRSDGITVEGIVCHVAN 515
           ++T S++G+GYA+ K    +G +V+  SR  D +    + +  L+ D   V+ +      
Sbjct: 9   LITGSSKGLGYALVKVGLAQGYNVIACSRAPDTITIEHSKLLKLKLDVTDVKSV------ 62

Query: 516 SDHRKKLFEVAKSKFGGLDILVSNA 590
               +  F+ AK +FG +DI+++NA
Sbjct: 63  ----ETAFKDAKRRFGNVDIVINNA 83


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +3

Query: 345 IVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGI 482
           +VT  ++G+G AIAK L   GA+V I +R    ++ AV  L    I
Sbjct: 26  LVTGGSQGLGKAIAKELVLRGANVTIVARTVTKLQEAVAELSDSKI 71


>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 397

 Score = 33.1 bits (72), Expect = 0.033
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 324 RLKGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKE 437
           ++ G V +VT  + GIG  + ++L   GA VVI  R E
Sbjct: 72  KMNGMVVMVTGGSSGIGQVVVEKLASLGAQVVILLRTE 109


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 501 CHVANSDHRKKLFEVAKSKFGGLDILVSN 587
           CH +N   RK+L + +K  FGG+ + V N
Sbjct: 34  CHYSNRARRKRLVQRSKETFGGITLPVKN 62


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
 Frame = +3

Query: 327 LKGKVAIVTASTEGIGYAIAKRLGHEGASVV-ISSRKEDNVENAVKSLRSDGITVEGIVC 503
           ++G+V ++T +  GIG  + K     G  V  I       V++A  +L++D         
Sbjct: 3   VEGRVVLITGAAGGIGKVLCKMFTELGDRVAGIDIVDPSKVQDAALALQAD--------- 53

Query: 504 HVANSDHRKKLFEVAKSKFGGLDILVSNAAV 596
            V+ +D  +   E      G +D+L++NA +
Sbjct: 54  -VSKADQIETAIEKVIQTLGPIDVLINNAGL 83


>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = +3

Query: 387 KRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVANSDHRKKLFEVAKSKFGG 566
           KRL  E A + + S K +N+E+   ++RS    + G +      +H K L+E   +K   
Sbjct: 215 KRLQLEMAKLDVESAKPENLEHCKSAVRSAEDELNGAI------EHAKILYEQILNKDYN 268

Query: 567 LDILVS 584
            D+L S
Sbjct: 269 TDLLRS 274


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +3

Query: 351 TASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLR 470
           T + EG+  ++ + L   G  V+++S  + N+EN ++ L+
Sbjct: 14  TGTAEGLAESLFRSLTRMGYDVLVNSMDDFNLENLLRPLQ 53


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 405 GASVVISSRKEDNVENAVKSLRSDGITVEGI--VCHVANSDHRKKLFEVAKSKFGGLDIL 578
           G +V ISS  +D +     SL +   +   I  +C+V N D RK L  +  S+ G ++ L
Sbjct: 129 GVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNIEEL 188


>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 405 GASVVISSRKEDNVENAVKSLRSDGITVEGI--VCHVANSDHRKKLFEVAKSKFGGLDIL 578
           G +V ISS  +D +     SL +   +   I  +C+V N D RK L  +  S+ G ++ L
Sbjct: 129 GVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNIEEL 188


>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -2

Query: 525 YDLNLQHDKLFLLL*YHRCVSF*LRFQHYLLFYCL*RLKRLHDP 394
           Y+ NL   +LF L     CV      Q Y  FYCL    R + P
Sbjct: 107 YETNLGKPELFWLDYLATCVRVPYACQGYSSFYCLSIFDRYYKP 150


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 330 KGKVAIVTASTEGIG--YAIAKRLGHEGASVVI 422
           +G++   T ST G+G  YAIA    H    +V+
Sbjct: 411 RGRLDAGTMSTMGVGMGYAIASAFAHSSDKIVV 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,315
Number of Sequences: 5004
Number of extensions: 45446
Number of successful extensions: 123
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)