Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15p13f
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.78 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.6  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +3

Query: 501 CHVANSDHRKKL-FEVAKSK 557
           C V NS H+KKL F +AK +
Sbjct: 349 CSVTNSPHQKKLRFHLAKER 368


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
 Frame = +3

Query: 192 KVEKFKHISTHGSLRMMFRLKFIRSLMNTKMSKTPN-FVRANHNDRLKGKVAIVTASTEG 368
           K+   KH     S++   +LK  R     K+S  PN   + N +  +K      + S EG
Sbjct: 653 KLMMLKHREFRSSIKASDKLKDSRIKTTEKLSTDPNTHFQVNQSHGIKRS---GSHSWEG 709

Query: 369 IGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITV 488
             + ++K    E +    + +   NV   V S+  D  TV
Sbjct: 710 DSFKVSKH--EEVSRTSTAGQFPTNVATTVTSMSIDQSTV 747


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 397 PNLFAIA*PIPSVDAVTIATFPFNLSL 317
           PNL  ++ P   +DAVT   F + L L
Sbjct: 269 PNLSKLSDPEVWIDAVTQIFFSYALGL 295


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 397 PNLFAIA*PIPSVDAVTIATFPFNLSL 317
           PNL  ++ P   +DAVT   F + L L
Sbjct: 322 PNLSKLSDPEVWIDAVTQIFFSYALGL 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,732
Number of Sequences: 438
Number of extensions: 3373
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)