Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15p10r
         (921 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   5.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   9.0  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   9.0  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   9.0  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 654 LASAIVVITTSGKSAHLLSKYR 589
           L   ++++T +  S H+LSKY+
Sbjct: 12  LFGVLLLLTNADNSVHILSKYQ 33


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 92  TNYYMYKRNVSRNCILVIGV 33
           TNYY++   +S   +LV+G+
Sbjct: 75  TNYYLFSLAISDLILLVLGL 94


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 92  TNYYMYKRNVSRNCILVIGV 33
           TNYY++   VS    L++G+
Sbjct: 68  TNYYLFNLAVSDLLFLILGL 87


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -1

Query: 909 RPTRAEISDVANAILDGADCVMLSGETAKGDYPVECVHTMANICKEAEAVIWHR 748
           +PT     ++   I++  D VML   T +G  P+     + NI  +   +  HR
Sbjct: 139 KPTTTS-DELKRGIINPED-VMLKRRTGEGSKPIFEREEIKNILNKTNEITEHR 190


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 126 VMRP*IMLNSLRKKIVYDIFFVYGVFI 206
           VMRP +++ S+   ++  I  +YG+ +
Sbjct: 45  VMRPELIMKSIIPVVMAGIIAIYGLVV 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,362
Number of Sequences: 438
Number of extensions: 4425
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)