Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15p10f
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 111 6e-26
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 27 2.0
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.7
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 2.7
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 2.7
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 26 3.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 4.7
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 4.7
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 25 8.2
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 111 bits (268), Expect = 6e-26
Identities = 59/118 (50%), Positives = 71/118 (60%)
Frame = +1
Query: 235 RLSGIICTIGPASRNVAVLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKSYSAKL 414
R + IICTIGP S NV L K+ + GMN+ RMNFSHGS+EYH I N R+A +
Sbjct: 26 RRTSIICTIGPKSNNVETLCKLRDAGMNIVRMNFSHGSYEYHQSVIDNARKASAT----- 80
Query: 415 GSPFSLAIALDTKGPEIRTGLLEGGGSAEVELKKGETIKLTTSSDYQEKGNADTIYVD 588
F LAIALDTKGPEIRTGL GG + + G + TT Y EK N +Y+D
Sbjct: 81 NPLFPLAIALDTKGPEIRTGLTVGG--TDYPISSGHEMIFTTDDAYAEKCNDKVMYID 136
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 145 GAVEKPTVANVGSQLQHMCGLDIDSKSSYIRLSGIICTIG 264
G + + ++ L+ + D+D+K +YI+LS T+G
Sbjct: 15 GTLNESSIYKTYQILESLNPKDVDTKENYIKLSNTFSTLG 54
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 26.6 bits (56), Expect = 2.7
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Frame = -2
Query: 491 PP--PSKSPVLISGPLVSNAMAKEKGEPSLAL*LFSASRQLRMVSAWYSWEPCEKFILAT 318
PP PS+ P + + P + EPS+ L LR + + +P K L T
Sbjct: 430 PPKHPSRQPTVRATPSTGKQIEPPNDEPSIGNELLPLFESLRFENRKTTSKPKAKKTLVT 489
Query: 317 FIPVSIIFSSTATLRDAGPIVQI--IPER 237
IP +S + D + + IPE+
Sbjct: 490 SIPTKPHQASVEKVYDLNSKINLKNIPEQ 518
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 521 SPFFSSTSAEPPPSKSPVLISGPLVSNAMAKEKGEPSL 408
SP ST+A P K+P + L+S +KEK PS+
Sbjct: 305 SPLHQSTTANHP-EKTPSRAAASLLSILDSKEKNTPSI 341
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 30 DCIQSDLNCVNYILLCVIINLRNIKQNESYCETLQ 134
+ I S + NY+L+C+ + L K +YCE+ Q
Sbjct: 1214 EIISSSNSFKNYLLVCLRMLLEVAKNVNTYCESRQ 1248
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = +1
Query: 259 IGPASRNVAVLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKSYSAKLGSPFSLAI 438
I P ++ + ++++ V R+N +H S ++ + SY +LG S I
Sbjct: 1194 ISPEAKTLLFQSIVIKSFSKVGRLNINHVSEPIDSDEFADYLSKSISYHLRLGKSKSKKI 1253
Query: 439 ALDTK 453
++ K
Sbjct: 1254 GIEIK 1258
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 207 RH*LQVFVHPSLRNNLYYWTGIP*CSCAR 293
RH L++ V L N+Y WT +P C +R
Sbjct: 2344 RHFLKLVV---LWKNIYVWTNVPDCDISR 2369
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 521 SPFFSSTSAEPPPSKSP 471
SP FSS+S PPP P
Sbjct: 231 SPIFSSSSTPPPPPPRP 247
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 8.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 419 HPSLWPSHWTLKDLRSELDSWKAAAQLK 502
HP+++PS + +E + WK A +K
Sbjct: 83 HPNVYPSGTVCLSILNEEEGWKPAITIK 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,544
Number of Sequences: 5004
Number of extensions: 42532
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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