Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15o24f
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    29   0.56 
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    28   0.97 
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    27   3.0  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    27   3.0  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   3.9  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.2  
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.2  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   6.9  
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    25   6.9  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.1  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    25   9.1  

>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 225 AHCIIDDAVGVWRVRVG-STWGNSGGVVHH-VNRHIIHPNYGRWSRDNDIAIM 377
           A C  DD + VW +  G +T    G ++H+      +HP   + S D+D+ ++
Sbjct: 262 ASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHPCMIQPSMDSDVFVL 314


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +3

Query: 111 TTINRYPTIAALLMTRNWSTWSQNCGSSILNNRSVLTAAHCIIDD 245
           TT+ +   +  L +T  W +W+   G+ IL++ + +     +I D
Sbjct: 136 TTVYQISVVLLLCLTMGWKSWTSASGAVILSSSTRMLPVFMVIWD 180


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = -2

Query: 593 CDGITTIPRPADALVYDPDLDVTKLLRE*AAEPSDSPASRPNHLVVAQVV 444
           C+G T  PRP+        + V+ LL E A        + P  L   Q V
Sbjct: 73  CEGYTHFPRPSGTFTASRRIPVSSLLSEPAPHGLAGQPTHPTFLYYIQSV 122


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 273 GSTWGNSGGVVHHVNRHIIHPNYGRWSRDNDIAIMRTS 386
           GS  GN GG++   N  I HP     SR+   +  RT+
Sbjct: 175 GSDMGNDGGMIPTFNHPIFHPE--NRSRNEQASANRTN 210


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 219  TAAHCIIDDAVGVWRVRVGSTWGNSGGVVHHVNRHII 329
            T+A C+ +    +W++R  +T+G      H +N+ +I
Sbjct: 1347 TSAQCVTE-IWNLWKLRTKATFGGQHDFQHCINKRLI 1382


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 409 MLCNRPAFLDQTTTWATTRWFGRLAG---ESLGSAAHSLSNF 525
           ++C+RP   +  TTW     F R+ G   ESL  +  S SN+
Sbjct: 47  IVCSRPIVDENVTTWPENEGF-RIEGTLLESLVESVTSASNY 87


>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +3

Query: 102 GSTTTINRYPTIAALLMTRNWSTWSQNCGSSILNNRSVLTAAHCIIDDAVG 254
           G TT+ N++P+ +  + +  +    ++C + I N  +V T +  +ID + G
Sbjct: 114 GPTTSKNKHPSHSNTIRSPPYKVKKESCHTEINNVSNVSTESINVIDASRG 164


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 492 TRFGGSLSEQLRHVQVWVVNQSVCRSR 572
           + FGGSL  +  H + W     +C+SR
Sbjct: 818 SNFGGSLHFEYHHEKYWPQLVELCKSR 844


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 16/78 (20%), Positives = 38/78 (48%)
 Frame = -3

Query: 265 TRQTPTASSMIQCAAVKTDRLLRIELPQFWDQVLQFLVISRAAIVGYRFIVVVLPPTILR 86
           ++QT  + +M + A +K+DR      P+  ++    L  +   + G +    ++PP++ R
Sbjct: 147 SKQTFDSENMGEHAWLKSDR--DYYYPELLNRFFTLLRTNNPELAGEKRKYTIVPPSVHR 204

Query: 85  DGAAEMAVKAVRLNARMN 32
           +G   +      ++ RM+
Sbjct: 205 EGKKTIFANISDISKRMH 222


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -3

Query: 205 LLRIELPQFWDQVLQF-LVISRAAIVGYRFIVVVLPPTIL 89
           LL+I++  F    +Q+ +V+   A+V +   ++VLP T+L
Sbjct: 173 LLKIDIYFFLGVTVQYVMVLPEDAVVEFVLTILVLPLTVL 212


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +3

Query: 330 HPNYGRWSRDNDIAIMRTSSNIN--YVNNAVQPARIPGSNY-NLG 455
           HPNYG W    D+   R +      +V   + P R   S Y N+G
Sbjct: 120 HPNYGCWLSGVDVETQRQNQKYQDPFVAVVLDPKRSLESPYVNIG 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,370
Number of Sequences: 5004
Number of extensions: 54460
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)