Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15o19f
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    54   2e-08
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    27   2.8  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    26   3.7  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    26   3.7  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   4.9  
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    26   4.9  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    26   4.9  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    26   4.9  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   6.4  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   8.5  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.5  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   8.5  

>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 60/196 (30%), Positives = 88/196 (44%), Gaps = 1/196 (0%)
 Frame = +1

Query: 16  VPDSSCTATAYLCGVKANQGTLGVTAAVPRHDCEASTDVTKRVQSIAEWALADGRDVGIV 195
           + DS+  ATA+ C  K   G +GV             D  K   +I E A   G   GIV
Sbjct: 112 ITDSAAGATAFSCANKTYNGAVGVL------------DNEKPCGTILEAAKEAGYLTGIV 159

Query: 196 TTTRITHASPAGAFAKVANRNWENDNDVKQEGHDVNRCPDIAHQLIKMAP-GNKFKVIFG 372
            T+R+T A+PA   A  ANR  +   D+            IA   + M P G    ++FG
Sbjct: 160 VTSRVTDATPASFSAHAANRFMQ---DL------------IAEYQVGMGPLGRSVDLLFG 204

Query: 373 GGRREFLPTTQVDEEGTRGLRTDGRNLIEEWQNDKESQKVSYKYLWNRQELLKLASSPPD 552
           GG   FLP +       R  R+D  +L+ ++   KE     ++ L NR +  +L+++   
Sbjct: 205 GGLCSFLPKSTY-----RSCRSDNLDLL-KYARKKE----GFQILLNRTDFDELSNAQLP 254

Query: 553 YLLGLFEGSHLQYHLE 600
            LLGLF   HL Y ++
Sbjct: 255 -LLGLFSDYHLSYDID 269


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 469 NDKESQKVSYKYLWNRQEL-LKLASSPP 549
           N+ ESQK+ +K  W+   L  K+AS PP
Sbjct: 15  NNAESQKIHWKSDWHHYNLKRKVASLPP 42


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +3

Query: 321 SPADQDGARKQI*SDLWRRKT-RIFTDNPSR*RGHPRSKNRRPQSDRRMAER*GVAESEL 497
           SP + DG      +D W R+T ++ T+N     G PR + R P +  ++          L
Sbjct: 298 SPKESDGL-----NDSWSRQTNQVETENVENEAGVPRKRGRPPGARNKIKRLRSEPSVSL 352

Query: 498 QVSVESTGTFE 530
            +S+     FE
Sbjct: 353 TLSISWYERFE 363


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 460 EWQNDKESQKVSYKYLWNRQELLKLASSPPDY 555
           E QN+K  Q+V Y ++  +Q+   + +SP D+
Sbjct: 70  EIQNEKSKQQVEYSFIPLKQDDGDILTSPGDF 101


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 508 WNRQELLKLASSPPDYLLGLFEGSHLQY 591
           W   +   LASSP   L+G+F+   L+Y
Sbjct: 602 WFDHQYENLASSPHPLLVGVFQNQPLEY 629


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 429 SKNRRPQSDRRMAER*GVAESELQVSVE 512
           +KNR+P S R++A   G++ + L  S+E
Sbjct: 142 AKNRQPTSSRQLANYSGISSAPLGSSLE 169


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 450 SDRRMAER*GVAESELQV--SVESTGTFETGLISARLPARTVRGQSLA 587
           +DRRM     VA+S + V   + STG+  TG+I+  LP    R +  A
Sbjct: 160 TDRRMELLASVADSFIYVVSRMGSTGSSATGVINTALPQLCQRVRKFA 207


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 466 QNDKESQKVSYKYLWNRQELLKLASSPPDYLLGLFEGSHLQYHLE 600
           Q D++  +V +   W R +LL++ S   D  +    G     HL+
Sbjct: 30  QMDRKEPEVRFAGGWVRDKLLRIESHDIDVAIDCMSGFEFAQHLQ 74


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 376 GRREFLPTTQVDEEGT-RGLRTDGRNLIEEWQNDKESQKVSYKYLWNR 516
           G+ E +P+ Q+  + + + + ++  N+     ND + Q   +  LWNR
Sbjct: 2   GQGESIPSRQIQRDASMQAVSSESENI-----NDSDRQNSGFSRLWNR 44


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 436 TDGRNLIEEWQNDKESQKVSYKYLWNRQELLKL 534
           T  +N + EW +D   +K S+ + W+  E+  L
Sbjct: 243 TLAKNNLWEWISDDNGKKFSHCHFWSNFEIADL 275


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 217 ASPAGAFAKVANRNWENDNDVKQEGHD 297
           A P G +A   N N EN  +    GHD
Sbjct: 57  AYPNGMYAGAENHNVENHENYTMVGHD 83


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = -2

Query: 249 GDLGESARRRGMRDASGRHYTDISPVSQCPLGDGLHPLGDVGGSLAVVPRHGGRHSEG 76
           G   +S + +  +   GR     SP S   + DG+  +  +  S+    +H  R++EG
Sbjct: 143 GSCSDSKKPQSNKKHRGRRVKH-SPKSTLEVPDGIPDIKALSASMGSSSQHASRYNEG 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,672
Number of Sequences: 5004
Number of extensions: 48069
Number of successful extensions: 149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)