Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15o19f
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0319 + 24355275-24355401,24355504-24355603,24356271-243566... 31 0.70
10_01_0159 - 1807806-1809386 29 2.1
07_03_0293 + 16321539-16321893,16322020-16322207,16322881-163229... 29 2.1
03_02_0885 - 12169913-12170497,12170593-12170943 29 2.1
01_01_0784 + 6068230-6068580,6068676-6069127,6070208-6070736 29 2.1
08_02_0451 + 17297293-17297793,17297866-17298130,17298215-172984... 28 5.0
07_03_1229 + 25023537-25024094 28 5.0
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 28 5.0
04_04_1354 - 32841778-32841983,32842079-32843093,32843184-328435... 28 5.0
01_03_0068 - 12188426-12188767 28 5.0
01_01_0652 + 4975091-4975585 28 5.0
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595... 28 6.5
06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724 28 6.5
03_01_0430 + 3320198-3320215,3320496-3320642,3321157-3321268,332... 28 6.5
01_06_0038 - 25819433-25820344 28 6.5
07_03_0829 - 21792924-21793247,21793332-21793482,21793577-217938... 27 8.7
05_03_0643 - 16515183-16515758,16516502-16516532,16516717-165167... 27 8.7
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 8.7
02_04_0346 - 22183145-22183264,22183877-22183966,22184140-221842... 27 8.7
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 27 8.7
01_01_1141 + 9052511-9052573,9052626-9052928 27 8.7
>04_04_0319 +
24355275-24355401,24355504-24355603,24356271-24356618,
24356705-24356745,24356821-24356867,24358043-24358107,
24358186-24358308,24358397-24358534,24358658-24358899,
24358988-24359118,24359363-24359388,24359746-24359882,
24359964-24360376,24360514-24360550,24360643-24360667,
24360755-24360887,24361241-24361340,24362015-24362115,
24362998-24363084
Length = 806
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 278 TSLSFSQFLLATLAKAPAGEACVMRVVVTIPTSLPS 171
TS F + + T + A AC+M V VTIPT + S
Sbjct: 216 TSCLFESYKMMTCSYADLDSACIMPVRVTIPTEMMS 251
>10_01_0159 - 1807806-1809386
Length = 526
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/42 (50%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 126 GGSLA-VVPRHGGRHSEGALVGLHAAQVCXXXXXXXRDLSVH 4
GGSLA VV R+GGR EGA V +AA V L VH
Sbjct: 94 GGSLADVVARNGGRLDEGA-VRTYAADVLRGLDYLHGKLVVH 134
>07_03_0293 +
16321539-16321893,16322020-16322207,16322881-16322904,
16323497-16323550,16323854-16323944,16324715-16324815,
16324949-16324999,16326626-16326754,16327772-16327834,
16327928-16328171,16329628-16329776,16329855-16329944,
16330343-16330477,16330579-16330635,16331079-16331135,
16332299-16332336,16332532-16332601,16332971-16333207
Length = 710
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -3
Query: 206 RVVVTIPTSLPSASAHSAMDCTRLVTSVEASQSCLGTAAVTPRVPWLAFTPHRYAVAV 33
R ++ P S P A A+D V A+ + + AVT W +PHR +AV
Sbjct: 44 RAYISAPASGPDAYPSPALDAAAAAADVAAAIA--SSDAVTWAGVWALLSPHRARIAV 99
>03_02_0885 - 12169913-12170497,12170593-12170943
Length = 311
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -2
Query: 249 GDLGESARRRGMRDASGRHYTDISPVSQCPLGDGLHPLGDVGG--SLAVVPRHGGRHSEG 76
G +G+ + G ++G H QC GDG+ LG GG S+ R GR S G
Sbjct: 153 GGVGQKEKGGGTGSSAGVHGRQRRFRGQCEGGDGVDALGGEGGGSSVGKSNRGSGRISAG 212
>01_01_0784 + 6068230-6068580,6068676-6069127,6070208-6070736
Length = 443
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -2
Query: 249 GDLGESARRRGMRDASGRHYTDISPVSQCPLGDGLHPLGDVGG--SLAVVPRHGGRHSEG 76
G +G+ + G ++G H QC GDG+ LG GG S+ R GR S G
Sbjct: 153 GGVGQKEKGGGTGSSAGVHGRQRRFRGQCEGGDGVDALGGEGGGSSVGKSNRGSGRISAG 212
>08_02_0451 +
17297293-17297793,17297866-17298130,17298215-17298410,
17298437-17298864,17298923-17299200,17299298-17299588
Length = 652
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 220 SPAGAFAKVANRNWENDNDVKQEGHDVNRCPDIAHQLIKMAPGNKFK 360
+PA + +++ D+D K+EG DV +A + A GN+ K
Sbjct: 322 APASTDSDADDKDTVIDHDDKEEGEDVGETEVVAEKATDEAAGNRAK 368
>07_03_1229 + 25023537-25024094
Length = 185
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 144 AVHRRVGTG*RERCRYSDDHSHHACLS 224
A RR+ TG RCR D + HHACL+
Sbjct: 31 ACERRI-TGDGYRCRKCDFNIHHACLA 56
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 370 GGGRREFLPTTQVDEEGTRGL 432
GGGR + P +DEEGTR L
Sbjct: 5 GGGRAKVTPNLAMDEEGTRVL 25
>04_04_1354 -
32841778-32841983,32842079-32843093,32843184-32843518,
32843590-32844019,32844155-32844214,32844531-32844651,
32845321-32846132
Length = 992
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3
Query: 224 GEACVMRVVVTIPTSLPSASAHSAMDCT 141
G CV V PTSLP + H A C+
Sbjct: 411 GSPCVPHVGARHPTSLPFSDGHQATSCS 438
>01_03_0068 - 12188426-12188767
Length = 113
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +3
Query: 63 GQPRHPRSDGRRAEARLRGFHRRHQAGAVHRRVGTG*RERCRYSDDHSHHA 215
G P + S GR + R RG RRH + G RCR D H A
Sbjct: 31 GSPPYGSSGGRHSGGR-RGLWRRHGSSLHAHGSIAGDNGRCRSGDGLKHEA 80
>01_01_0652 + 4975091-4975585
Length = 164
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 36 GDGIPVRREGQPRHPRSDGRRAEARLRGFHRRHQAGAVHR 155
G P RR + RH + G+R EA +G +R G R
Sbjct: 21 GGWAPTRRRPEGRHGEAAGKRREAAGKGGRQREARGGGRR 60
>10_06_0102 + 10758601-10758948,10759051-10759257,10759349-10759507,
10759617-10759709,10759913-10760008,10760457-10760724,
10760805-10761047,10761298-10761422,10761499-10761615,
10761705-10761779,10761886-10761942,10762035-10762139,
10762244-10762330,10762790-10763047,10763075-10763263,
10763418-10763528,10763640-10763729,10763814-10763990,
10764075-10764152,10764412-10764726,10764819-10765162,
10765304-10765541,10765631-10765998,10766106-10766316,
10766622-10766801,10766886-10769045,10769151-10769207
Length = 2251
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 19 PDSSCTATAYLCGVKANQG 75
P++SC A A +CGV+ +QG
Sbjct: 1840 PENSCDARAAICGVQDSQG 1858
>06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724
Length = 353
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +1
Query: 121 STDVTKRVQSIAEWALADGRDVGIVTTTRITHASPAGAFAK 243
+++V +R + IA++ L DG ++GI + +T SPA A A+
Sbjct: 2 ASEVVRRRRRIADY-LNDGEELGIEGSPAVTPRSPALAAAR 41
>03_01_0430 +
3320198-3320215,3320496-3320642,3321157-3321268,
3321389-3321504,3321557-3321671,3321791-3321915,
3322145-3322215,3322308-3322368
Length = 254
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 382 REFLPTTQVDEEGTRGLRTDGRNLIEEWQNDKESQKV----SYKYLWNRQELLKLASSPP 549
+EF+P +++ E G R + ++W+ND+ +K+ Y Y+ EL+ + P
Sbjct: 83 KEFIPLSKLSELGILSWRLNA----DDWENDENLKKIREARGYSYMVCISELVDICDVCP 138
Query: 550 DYL 558
+ L
Sbjct: 139 EKL 141
>01_06_0038 - 25819433-25820344
Length = 303
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 54 RREGQPRHPRSDGRRAEARLRGFHRRHQAGAVHRRVGTG*R 176
+++ QP+ R GR A +RLR AG HR+VG G R
Sbjct: 75 QQQQQPQQQRRKGRTAVSRLRTALAAALAGR-HRQVGLGAR 114
>07_03_0829 -
21792924-21793247,21793332-21793482,21793577-21793811,
21793900-21794110,21794218-21794435,21794536-21794671,
21796732-21797517
Length = 686
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -2
Query: 201 GRHYTDISPVSQCPLGDGLHPLGDVGGSLAVVPRHGGRHSEGALV 67
G Y DI P + + + P+ GSLAVV GG G LV
Sbjct: 68 GIWYRDIDPPTVVWVANRDAPVSGTAGSLAVVVNGGGGGGGGRLV 112
>05_03_0643 -
16515183-16515758,16516502-16516532,16516717-16516756,
16517183-16517243
Length = 235
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/76 (28%), Positives = 32/76 (42%)
Frame = -3
Query: 308 QRLTSWPSCFTSLSFSQFLLATLAKAPAGEACVMRVVVTIPTSLPSASAHSAMDCTRLVT 129
QR T W C T ++F + LA AC I + P ++ + +
Sbjct: 105 QRRTFWTKCATCKEKNKFPITNLACQVVCPACT-ETFTAIEVARPRNTSLYCKEKLESSS 163
Query: 128 SVEASQSCLGTAAVTP 81
SV A+ S L + AVTP
Sbjct: 164 SV-AANSSLQSTAVTP 178
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -2
Query: 246 DLGESARRRGMRDASGRHYTDISPVSQCPLGDGLHP 139
D+GE+ + G+ +T +P+ + +GDG+ P
Sbjct: 23 DIGETVEDFDEVEKLGKWFTSANPLEEVDIGDGMKP 58
>02_04_0346 -
22183145-22183264,22183877-22183966,22184140-22184220,
22184430-22184589,22184723-22184787,22185370-22185441,
22186163-22186327
Length = 250
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 150 GLHPLGDVGGSLAVVPRHGGRHSEGALVGLHAAQVC 43
G H DVGG +A R G GAL+G+ ++C
Sbjct: 2 GDHVAVDVGGLMA--SRGAGEEETGALIGMVECRIC 35
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -2
Query: 282 FHVVIILPVPVGDLGESA--RRRGMRDAS 202
F V + LP+ VGD GE A RR+ M +A+
Sbjct: 96 FGVPVALPIAVGDAGEPADLRRQAMSNAA 124
>01_01_1141 + 9052511-9052573,9052626-9052928
Length = 121
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 3 RERSSPGLVVHGDGIPVRREGQPRHPRSDG 92
R+ + V G G P RR G+ R PR G
Sbjct: 53 RQSTGGSCEVGGGGRPARRRGESRRPRDGG 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.132 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,538,491
Number of Sequences: 37544
Number of extensions: 411852
Number of successful extensions: 1585
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1581
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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