Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15o13f
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    40   3e-04
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    32   0.052
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo...    29   0.48 
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    28   1.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.6  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   7.9  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    25   7.9  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   7.9  

>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +3

Query: 408 LDLSYNSIETLKGLEQFARLEELILDNNQL--SDGIKFPKLPYLKTLSLNNNQIANL 572
           LD+SYN +E L GL     L EL +D+N L   DGI+   L  L  LS  NN+I  L
Sbjct: 673 LDISYNQLEDLTGLSSLIHLRELKVDSNHLWSLDGIQ--HLDGLLKLSACNNRIKEL 727



 Score = 35.1 bits (77), Expect = 0.007
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +3

Query: 462 RLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANL 572
           RLEEL+L NN++ +  +   L  L  L L+NN++ NL
Sbjct: 736 RLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNL 772



 Score = 31.5 bits (68), Expect = 0.091
 Identities = 22/80 (27%), Positives = 40/80 (50%)
 Frame = +3

Query: 333 LSYCGQDCKKIPPALQKMYGAKVKCLDLSYNSIETLKGLEQFARLEELILDNNQLSDGIK 512
           LS C    K++      ++  +++ L L  N IE ++ +     L  L LDNN+L++   
Sbjct: 717 LSACNNRIKELSFTNSNLH--RLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLKA 774

Query: 513 FPKLPYLKTLSLNNNQIANL 572
              + +L+ L ++NN I  L
Sbjct: 775 SQPMIHLRILRISNNAIHQL 794


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 32.3 bits (70), Expect = 0.052
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 408 LDLSYNSIETLKGLEQFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQI 563
           LDLS+N+I+T++ +     LE L    N++        L  L  L L  N+I
Sbjct: 109 LDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLELGGNKI 160



 Score = 28.3 bits (60), Expect = 0.84
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 399 VKCLDLSYNSIETLK--GLEQFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANL 572
           V C++L  + I+++   GLE+F  L+ L L  NQ+      P+   L  L L +N I  +
Sbjct: 40  VDCVELIQSRIQSMASLGLERFKNLQSLCLRQNQIKKIESVPET--LTELDLYDNLIVRI 97



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 408 LDLSYNSIETLKGLEQFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIAN 569
           L +S+N + +  G+E    LE L + NN +        L  L  L  +NN++++
Sbjct: 220 LYVSHNGLTSFSGIEVLENLEILDVSNNMIKHLSYLAGLKNLVELWASNNELSS 273


>SPBC1861.08c |||U2 snRNP-associated protein Lea1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 408 LDLSYNSIETLKGLEQFARLEELILDNNQLSD-GIKFPK-LPYLKTLSLNNNQIANL 572
           +D + N I  L    +  RL+ L+  NN+++       K LP LKTLSL  N +  +
Sbjct: 46  IDFTDNDIRYLGNFPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNHLQEI 102


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 381 SVRPVEFFYSLARNSLERYW*RIKQN 304
           + +   FFY L +N L++ W R++ N
Sbjct: 172 NTKKTRFFYPLGKNCLQKLWGRVETN 197


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +3

Query: 411 DLSYNSIET-LKGLEQFARLEELILDNNQLSDGIKFPKLPYLKT-LSLNNNQIAN 569
           DLS   +ET LKG E ++  ++ I DN++       P++  ++T  S+ N  I N
Sbjct: 155 DLSKEDLETTLKGDENYSSSQKEIYDNDETIPKPPSPEVEKIETSTSVENAYITN 209


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +3

Query: 288 ETHINNFALSFTNNVLSYCGQDCKKIPPALQKMYGAKVKCLDLSYNSIETLKGLEQFARL 467
           E  ++    +F   +L    Q  +     L+KM G   K  D +    ET+  LEQ   +
Sbjct: 464 EERVSEVERTFLTKLLEESAQGIEYTDQKLEKMGGWMKKLQDENSEKTETIAQLEQI--I 521

Query: 468 EEL 476
           EEL
Sbjct: 522 EEL 524


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 256 VNRFS*HNVQFFNTFNSTIHLPSLHIR 176
           +  F+ H +  FNT+NS    P+  ++
Sbjct: 321 IKEFAIHELNLFNTYNSVCQTPTTDLQ 347


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 547 RDRVFKYGNFGNLIPSLNWLLSKINSSSLANCS 449
           +D   KY   GN  PS++  ++ +NS++ +N S
Sbjct: 273 KDMAIKYPKPGNPNPSVSLFVADLNSNASSNFS 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,844
Number of Sequences: 5004
Number of extensions: 50408
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)