Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15o12f
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0170 - 23268714-23268950,23269040-23269303,23269379-232694...    31   0.64 
04_04_1196 + 31663113-31663337,31663719-31663802,31665340-316654...    30   1.5  
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221...    29   2.6  
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524...    27   7.9  
01_06_1218 - 35489224-35489408,35489497-35489626                       27   7.9  

>04_04_0170 -
           23268714-23268950,23269040-23269303,23269379-23269494,
           23269574-23269792,23269961-23270080,23270170-23270283,
           23271870-23271946,23272527-23272657
          Length = 425

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
 Frame = +1

Query: 130 DYMITVIQKTVEEFENREWCNFKLPDVVQEINEV-IFGQETKGTVK---YANGFLVSVQH 297
           D  +T +    EE   ++ C  ++ D  + ++ + + GQ   G V     ANG+ V+V+H
Sbjct: 106 DIEVTAVSVEYEEVTCKQMCTKEIYDATENLSPLNVIGQGIAGKVYKGVLANGWPVAVKH 165

Query: 298 L------DIMQSTVQQFWNRTHPGLVEVRG 369
           +      +     V    +  HP LV +RG
Sbjct: 166 IVKNEHAETFLREVTSLSHVRHPNLVSLRG 195


>04_04_1196 +
           31663113-31663337,31663719-31663802,31665340-31665427,
           31666645-31666830,31667245-31667351
          Length = 229

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -3

Query: 362 TSTSPGCVRFQNCWTVDCIMSK--CCTETRKPLAYLTV 255
           T  +PGC+ F+   T+  + +K  C +ET+KP  YL +
Sbjct: 88  TEKTPGCL-FEEATTMQSLCAKLNCGSETKKPFYYLLI 124


>02_02_0482 -
           10819562-10819813,10820773-10820952,10822073-10822150,
           10823056-10823256,10823365-10823550,10823646-10823783,
           10824396-10824501,10824634-10824692
          Length = 399

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = +1

Query: 151 QKTVEEFENREWCNFKLPDV--VQEINEVIFGQETKGTVKYANGFLVSVQHLDI--MQST 318
           +KTV+ F  ++W + K P V  V+ I + +  + T+GT   + G    V  + +  +Q+ 
Sbjct: 18  KKTVDPFSKKDWYDIKAPTVFSVRNIGKTLVSR-TQGTKIASEGLKHRVFEVSLADLQND 76

Query: 319 VQQFWNRTHPGLVEVRGR 372
             Q + +      +V+GR
Sbjct: 77  EDQAYRKVRLRAEDVQGR 94


>03_02_0043 +
           5242496-5242554,5242673-5242778,5243586-5243723,
           5243794-5243979,5244075-5244275,5244362-5244460
          Length = 262

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = +1

Query: 151 QKTVEEFENREWCNFKLPDV--VQEINEVIFGQETKGTVKYANGFLVSVQHLDI--MQST 318
           +KTV+ F  ++W + K P V  V+ I + +  + T+GT   + G    V  + +  +Q+ 
Sbjct: 18  KKTVDPFAKKDWYDIKAPSVFNVRNIGKTLVSR-TQGTKIASEGLKHRVFEVSLADLQND 76

Query: 319 VQQFWNRTHPGLVEVRGR 372
             Q + +      +V+G+
Sbjct: 77  EDQAYRKIRLRAEDVQGK 94


>01_06_1218 - 35489224-35489408,35489497-35489626
          Length = 104

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 392 VTSCILNLPLTSTSP-GCVRFQNCWTVDCIMSKCCTETRK 276
           V  C L L + ++S    V+ ++CW VD +    CT T K
Sbjct: 31  VLRCALVLLIVASSEVWSVQGEDCWNVDNVRYLVCTHTHK 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,251,407
Number of Sequences: 37544
Number of extensions: 313899
Number of successful extensions: 718
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)