Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15o12f
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like ...    29   1.8  
AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to SU...    29   1.8  
U39999-7|AAY44012.1|  232|Caenorhabditis elegans Hypothetical pr...    27   7.1  

>U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like
           protease protein 1 protein.
          Length = 697

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = +1

Query: 196 KLPDVVQEINEVIFGQETKGTVKYANGFLVSVQHLD--IMQSTVQQFWNRTHPG--LVEV 363
           KL D++ +IN +  G   +G  +Y N + +S Q  D  + ++ +++       G  L +V
Sbjct: 389 KLNDILSQINSLGIGSAYRGPQRYQNSYQLSKQKEDKLLEEARIREGHRSQTRGDRLEDV 448

Query: 364 RGRLRMHDVTV 396
           R RL +  + +
Sbjct: 449 RKRLELQGIAI 459


>AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to
           SUMO-1-specific protease protein.
          Length = 697

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = +1

Query: 196 KLPDVVQEINEVIFGQETKGTVKYANGFLVSVQHLD--IMQSTVQQFWNRTHPG--LVEV 363
           KL D++ +IN +  G   +G  +Y N + +S Q  D  + ++ +++       G  L +V
Sbjct: 389 KLNDILSQINSLGIGSAYRGPQRYQNSYQLSKQKEDKLLEEARIREGHRSQTRGDRLEDV 448

Query: 364 RGRLRMHDVTV 396
           R RL +  + +
Sbjct: 449 RKRLELQGIAI 459


>U39999-7|AAY44012.1|  232|Caenorhabditis elegans Hypothetical
           protein F41G3.20 protein.
          Length = 232

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -3

Query: 362 TSTSPGCVRFQNCWT--VDCI-MSKCCTETRKPLAYLTVPFVSCPKMTSFIS*TTSGS 198
           TS+S  C+   N  T   DC  M+  CT +    AYLT+    CPK   + + ++S S
Sbjct: 132 TSSSSTCIDLTNASTGVSDCPGMASYCTNS----AYLTLMKQQCPKTCGYCTSSSSSS 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,670,085
Number of Sequences: 27780
Number of extensions: 299679
Number of successful extensions: 878
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)