Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15o11r
         (960 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...   120   3e-29
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   1.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   3.1  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   7.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.2  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   7.2  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   7.2  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   7.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score =  120 bits (288), Expect = 3e-29
 Identities = 76/250 (30%), Positives = 128/250 (51%), Gaps = 13/250 (5%)
 Frame = -2

Query: 833 TRIIGGSPTTIERYPYTVQV--LYNGQLSCGGSLITKRHVLSAGHCFIDTNGNVASPTLF 660
           +RI+GG+ T I  +P    +   Y   + CG ++I+KR+VL+A HC ID N    +  + 
Sbjct: 159 SRIVGGTNTGINEFPMMAGIKRTYEPGMICGATIISKRYVLTAAHCIIDENTTKLAIVVG 218

Query: 659 SIRSGSSVLYSGGSIHSVSMIIVHERYNVPIRD----NDIAVLVLSSPVTLSASVAQACI 492
                S    +   +HS++ +I+H +Y++  +D    NDIA+L     +     V  AC+
Sbjct: 219 EHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACL 278

Query: 491 PVQ-WAEVPDNSSVIHVGWGRTNVNVAQASSVLNEVEVRIVNRDVCRTRYEFLESVTGDP 315
           P Q + +    S V  +GWG T+ N    S +L +  + ++ +  C   Y++  +     
Sbjct: 279 PFQHFLDSFAGSDVTVLGWGHTSFN-GMLSHILQKTTLNMLTQVEC---YKYYGN----- 329

Query: 314 FPVTVNMICAGLLDIGGKDACQGDSGGPLIYNN------IVVGLTSWGYGCAEPMFPGVS 153
             + VN +CA      GKDACQ DSGGP+++ N      + +G+ SWG  C +  +P  +
Sbjct: 330 --IMVNAMCA---YAKGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECGK--YPNGN 382

Query: 152 ARVSSYTNWI 123
            +V SY +WI
Sbjct: 383 TKVGSYIDWI 392


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 438 GQD*CERSSSFFSPQRG*GPDSQQGCLPDSVRVSGERDR 322
           G D     SSFF    G  PD Q+  + +   + G+ DR
Sbjct: 349 GHDTTASGSSFFLAVMGCHPDIQEKVIQELDEIFGDSDR 387


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 836 DTRIIGGSPTTIERYPYTVQV 774
           DT  IG   TTI+  PYT+ +
Sbjct: 145 DTGTIGIGNTTIQACPYTLNI 165


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 528 CDPERERGASLYT 490
           C PER+RG   YT
Sbjct: 4   CVPERKRGRQTYT 16


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 617 IHSVSMIIVHERYNVPIRDND 555
           IH +  ++V  RYN P + +D
Sbjct: 346 IHVLPRLLVMRRYNTPSKRSD 366


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 248 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 355
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 248 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 355
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 248 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 355
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 248 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 355
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 248 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 355
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 248 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 355
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 248 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 355
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 248 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 355
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 272,384
Number of Sequences: 438
Number of extensions: 6738
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31565079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)