Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15o11f
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    81   6e-18
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   1.7  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   3.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 81.4 bits (192), Expect = 6e-18
 Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 7/145 (4%)
 Frame = +1

Query: 142 TRIIGGSPTTIERYPYTVQV--LYNGQLSCGGSLITKRHVLSAGHCFIDTNGNVASPTLF 315
           +RI+GG+ T I  +P    +   Y   + CG ++I+KR+VL+A HC ID N    +  + 
Sbjct: 159 SRIVGGTNTGINEFPMMAGIKRTYEPGMICGATIISKRYVLTAAHCIIDENTTKLAIVVG 218

Query: 316 SIRSGSSVLYSGGSIHSVSMIIVHERYNVPIRD----NDIAVLVLSSPVTLSASVAQACI 483
                S    +   +HS++ +I+H +Y++  +D    NDIA+L     +     V  AC+
Sbjct: 219 EHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACL 278

Query: 484 PVQ-WAEVPDNSSVIHVGWGRTNVN 555
           P Q + +    S V  +GWG T+ N
Sbjct: 279 PFQHFLDSFAGSDVTVLGWGHTSFN 303


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 139 DTRIIGGSPTTIERYPYTVQV 201
           DT  IG   TTI+  PYT+ +
Sbjct: 145 DTGTIGIGNTTIQACPYTLNI 165


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 447 CDPERERGASLYT 485
           C PER+RG   YT
Sbjct: 4   CVPERKRGRQTYT 16


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 358 IHSVSMIIVHERYNVPIRDND 420
           IH +  ++V  RYN P + +D
Sbjct: 346 IHVLPRLLVMRRYNTPSKRSD 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,794
Number of Sequences: 438
Number of extensions: 4065
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)