Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15o10f
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.25 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.25 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   1.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   7.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   7.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   7.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 240  NREDVIFPQCINSGPFKKVLCTQSTSLYITNHEPV--SPFIPYLLIPDSG 97
            N +++   +   S   K +LC  +  LY+T+H  +  SP  P L +   G
Sbjct: 1447 NLDELQLSRHATSHELKGLLCGNTYQLYLTSHNKIGSSPSSPVLSVRTQG 1496


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 240  NREDVIFPQCINSGPFKKVLCTQSTSLYITNHEPV--SPFIPYLLIPDSG 97
            N +++   +   S   K +LC  +  LY+T+H  +  SP  P L +   G
Sbjct: 1443 NLDELQLSRHATSHELKGLLCGNTYQLYLTSHNKIGSSPSSPVLSVRTQG 1492


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 336 QRYSKGMAHESYSLEASSGL 395
           Q+Y++  AH+S + EA S L
Sbjct: 241 QKYTRSFAHQSINKEARSNL 260


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 336 QRYSKGMAHESYSLEASSGL 395
           Q+Y++  AH+S + EA S L
Sbjct: 236 QKYTRSFAHQSINKEARSNL 255


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = +1

Query: 181 ENFLERTRVNALRKNDILPVEIREIADKQINQFE 282
           + +++ +++  + K+DIL + I ++  KQ+   E
Sbjct: 349 QKYVKNSKLEKVIKHDILRMLIIDLRKKQLKSLE 382


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 205 VNALRKNDILPV 240
           VN L  NDILPV
Sbjct: 43  VNTLISNDILPV 54


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 205 VNALRKNDILPV 240
           VN L  NDILPV
Sbjct: 81  VNTLISNDILPV 92


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 190 LERTRVNALRKNDILPVEIR 249
           LE  RVN     ++LP+++R
Sbjct: 13  LENWRVNNSNYTELLPIDMR 32


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 406 RVCCNPLDASRLYD 365
           R+C    DA RLYD
Sbjct: 13  RICHGNPDAKRLYD 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,701
Number of Sequences: 438
Number of extensions: 2552
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)