Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15o07f
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    29   0.52 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    28   0.90 
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    27   1.6  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   2.7  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    27   2.7  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.7  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    26   4.8  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   6.3  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   8.4  

>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
 Frame = +1

Query: 139 CQVAQTCVH-DATVSDCLAGEVLAPNVHIFNCCPACRLPGPTDPGDGTEC--KPP--SSC 303
           C V  +C++ +   S C+  +   P   ++  C      GPT    G+EC    P  S C
Sbjct: 44  CVVGSSCIYSNPWYSQCIPVDYTGPCAKLYQQCGGINYNGPTCCEPGSECIYNGPYYSQC 103

Query: 304 LP 309
           +P
Sbjct: 104 IP 105


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 263  IRAMVRSANHLLAVYLMVLLDQYNAKAICSQDG 361
            I +++++A  LLA+ +  L+DQ  AK  C  DG
Sbjct: 3169 IMSILKTAYPLLALTMETLVDQIQAKFKCKNDG 3201


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +2

Query: 158 VSTTPQFLIVLLAKFWHQMYTFSIVVLRVDYLARLIRAMVRSA 286
           V+T P ++ +L+AK W  +   ++ V+   Y + +  A++R A
Sbjct: 72  VTTVPSWVQILVAKIWTGLSIGALSVITPGYQSEVAPAIMRGA 114


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 489 CYKFSSRCFYFGSSSATCATHVTSFIPPHLSKYSVSIFI 373
           CY FSS   Y  S   TC++   S +  HL++   S ++
Sbjct: 152 CYLFSSYFSYKSSRQYTCSSEEISKVFRHLNRLGGSEYV 190


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 167 TPQFLIVLLAKFWHQMYTFSIVV 235
           TP+   V L  FW++M  FS+VV
Sbjct: 433 TPEVSAVTLCLFWNKMTRFSLVV 455


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 415 HSATFVQIFCFHLYRNRN 362
           H +T V+IFC HL R  N
Sbjct: 105 HPSTDVEIFCLHLIRRAN 122


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 172 WRRGHRFARLDTANSPHKTNRNTMLTLSRSS 80
           WRR +R A       PH +  NT  +LS +S
Sbjct: 478 WRRRYRVAPPAENEKPHTSRTNTASSLSSTS 508


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 385 NRIFGQMWRNEASDM 429
           +RI GQ+WRNE++ +
Sbjct: 43  SRIIGQLWRNESAQV 57


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 161 STTPQFLIVLLAKFWHQMYTFSIV 232
           STT  FL++L ++F+H++    +V
Sbjct: 659 STTVNFLMILCSRFFHRLAVNKVV 682


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,084
Number of Sequences: 5004
Number of extensions: 56658
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)