Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15o07f
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1320 - 32623378-32623949,32624035-32624451,32624548-326248... 31 0.70
08_01_0475 - 4185534-4186047,4187437-4187708,4188032-4188979,419... 31 0.92
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 31 0.92
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 29 2.8
09_02_0339 + 7452967-7453068,7453281-7453339,7453889-7454701,745... 28 4.9
07_03_1136 + 24218601-24218734,24218769-24219906 28 4.9
01_01_1029 - 8152182-8152589 28 4.9
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 28 6.5
06_03_0543 + 21967787-21970261 27 8.6
05_06_0216 - 26453029-26454597 27 8.6
01_05_0510 - 22816607-22816916,22817005-22817177,22817341-228176... 27 8.6
>04_04_1320 -
32623378-32623949,32624035-32624451,32624548-32624895,
32625671-32625768,32625882-32626051,32627134-32627418,
32628041-32628119,32628481-32628623,32629227-32629634
Length = 839
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 271 DGTECKPPSSCLPDGSFGPVQCKGDMFTGRCFCSDKD 381
D T P SC+ DG+ V C + G+ C+DKD
Sbjct: 312 DDTFQPPFKSCVIDGNVASVMCSYNKVNGKPTCADKD 348
>08_01_0475 -
4185534-4186047,4187437-4187708,4188032-4188979,
4190096-4190387,4190486-4191357,4192298-4192354,
4192391-4192504,4192966-4193595
Length = 1232
Score = 30.7 bits (66), Expect = 0.92
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Frame = +1
Query: 358 RCFCSDKDGNRIFGQM--WRNEASDMSCACSRRRAEIE---ASGR--KFVTLHCTGNGDY 516
RC GNR +RN+ D++C +R + A R K + H +G+GD
Sbjct: 426 RCLLLASSGNRKSDNRDDFRNKRLDLACELLQRELWVHIMHAQKRMVKVMQRHLSGDGDL 485
Query: 517 EPLQC 531
+PL+C
Sbjct: 486 QPLEC 490
>01_06_1801 -
39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 30.7 bits (66), Expect = 0.92
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 296 LAVYLMVLLDQYNAKAICSQDGVSVPIKMETEYLDKCGGMKL 421
LA+ L++L+ Q+ +K I + D IKM +E D+C G+ L
Sbjct: 782 LAIPLLLLIAQHRSKIIINADATY--IKMVSEQFDRCHGILL 821
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -1
Query: 566 VLTFAHQHSPSSHCKGS*SPLPVQ--CSVTNFLPDASISARLLLHAQLMSLASFRHICPN 393
+L + + S S+ C G S LP + + N L D S AR A ++ CPN
Sbjct: 93 ILGISPEESTSTPCTGRNSSLPFEEIRRMKNNLSDISNKARERSRAYGAAVTKIERCCPN 152
Query: 392 IL 387
IL
Sbjct: 153 IL 154
>09_02_0339 +
7452967-7453068,7453281-7453339,7453889-7454701,
7455123-7455498,7455978-7456019
Length = 463
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 535 HHIVRAHNHRYQYSVVLQIFFPMLL 461
H +V NH+Y + VV I FP+ L
Sbjct: 156 HQVVHIINHQYHFQVVRTIRFPLAL 180
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/72 (22%), Positives = 34/72 (47%)
Frame = +2
Query: 245 DYLARLIRAMVRSANHLLAVYLMVLLDQYNAKAICSQDGVSVPIKMETEYLDKCGGMKLV 424
+YL L A+ +SANH++ +Y+ + + + +Q + + L +C G K+
Sbjct: 4 NYLQILDEALQQSANHIIEIYVHISISMVKWRKNFNQKDIPLLPCKALVTLIQCNGFKVD 63
Query: 425 T*VAHVAEDEPK 460
A + +P+
Sbjct: 64 LRAAAAPKPDPE 75
>01_01_1029 - 8152182-8152589
Length = 135
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1
Query: 286 KPPSSCLPDGSFGPVQCKG 342
KPPS CL GS G CKG
Sbjct: 56 KPPSVCLEPGSPGATCCKG 74
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Frame = +1
Query: 115 WFCVVNSQCQVAQTCVHDATVSD----CLAGEVLAPNVHIFNCCPACRLPGPTDPGDG-- 276
WF S+CQ+ Q ++ + D C G V + F+ +D D
Sbjct: 205 WFSGNYSECQLLQDYLNSISPKDHLYACCTGNVFYDAQNYFSTPEGDSENVQSDDDDSGP 264
Query: 277 TECKPPSSCLPDGSFGPVQCKGDMFTGRCFCSDKDGN 387
++C SS S+ P C G + SD N
Sbjct: 265 SQCMRESSSFTSSSYTPPPCSGPYKRRKIIRSDAGNN 301
>06_03_0543 + 21967787-21970261
Length = 824
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Frame = +1
Query: 76 LSRTWIVLALCFYWFCVVNSQCQVAQTCVH-DATVSDCLAG-EVLAPNVHIFNCCPACRL 249
+ RTW V + F C V C CV+ C G E++ P+ C P L
Sbjct: 264 VDRTWSVTWMAFPQLCKVRGLCGQNGICVYTPVPACACAPGYEIIDPSDRSKGCSPKVNL 323
>05_06_0216 - 26453029-26454597
Length = 522
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 449 LLLHAQLMSLASFRHICPNILFPSLSEQKHR 357
+L H +M+ ++RH PN L P++ + R
Sbjct: 78 ILRHRGVMNWIAYRHAIPNSLMPAIRRHERR 108
>01_05_0510 -
22816607-22816916,22817005-22817177,22817341-22817607,
22817951-22818393,22818474-22818635,22820991-22821414,
22823177-22823227
Length = 609
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 259 TDPGDGTECKPPSSCLPDGSFGPV-QCKGDMFTGRCFCSDKD 381
+D G+G KPP +C PD S G V T R + D D
Sbjct: 523 SDSGNGL-VKPPLTCSPDASLGSVIDSIASRITHRIYVVDGD 563
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,746,645
Number of Sequences: 37544
Number of extensions: 404582
Number of successful extensions: 1180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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