Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15o04f
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    54   1e-08
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    29   0.40 
SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe...    27   2.1  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   6.4  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   6.4  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   6.4  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   8.5  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.5  
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    25   8.5  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   8.5  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   8.5  
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    25   8.5  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 4/153 (2%)
 Frame = +2

Query: 158 LKKAGYDFWTDILTIGGNARVMVAPEQEQEFVSYALSVGLKPNVTISNVQALINSQLQPA 337
           LK+  +DFW         + +++    E  F S        P  T + +QA+ N  L   
Sbjct: 115 LKEENFDFWKSQY----RSDILINNLTETLFESIVPDTTNSPFSTEAFLQAVENGHLN-- 168

Query: 338 TNARSSTLGSFSWDRYYSLAQIHSWLDELVTLYPGVVTTMVIGTSFEGRELKGIVIDFK- 514
            +   ++     +  Y +L  I+SWL  + +LY  +   + +G + EGR + G+ ++ + 
Sbjct: 169 -HEMFTSFTDIFFKSYQNLESINSWLRLMASLYKDLSELVPVGITAEGRTILGLKLNGRH 227

Query: 515 ---KGERGNNPLIGMIEGGIHSREWISPATVTW 604
               GE+  N  + +I+GG H+REWI   +V +
Sbjct: 228 PSDNGEKIRNKKVIIIQGGSHAREWIGIPSVCY 260


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +2

Query: 287 VTISNVQALINSQLQP-ATNARSSTLGSFSWDRYYSLAQIHSWLDELVTLYPGVVTTMVI 463
           +T  N   +++SQLQP AT +RSS L SFS   + S   + S   + +    G  T+  +
Sbjct: 456 ITKDNDDIILSSQLQPTATGSRSSRL-SFSRHGHGSQTSLGSIKRKSIMERMGRPTSPFM 514

Query: 464 GTSF 475
           G+SF
Sbjct: 515 GSSF 518


>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
           phosphopantetheinyl transferase Lys7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +2

Query: 242 QEFVSYALSVGLKPN-----VTISNVQALINSQLQPATNARSSTLGSFSWDRYYSLAQIH 406
           +E +  AL +GL  N     VT   +  L+NS+      A ++    +SWD       +H
Sbjct: 172 KEAILKALGIGLSGNPLDIVVTFHKLNELLNSEEVSLRRAATAVYSGYSWDLEIHKLILH 231

Query: 407 S 409
           S
Sbjct: 232 S 232


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
 Frame = +2

Query: 89   SYENYKVYNVVPTSEIHIQTLGDLKKAGYDFWTDILTIGGN---ARVMVAPEQEQEFVSY 259
            +Y NY + ++      H   L   +   Y  W D +  GG    A      E+ Q  VS+
Sbjct: 1846 TYSNYLLKSIKTLPLFHFLDLNVTEYWDYLLWMDSVNYGGKMVAANFSATNEEPQTVVSW 1905

Query: 260  ALSVGLKP 283
             +   L P
Sbjct: 1906 HIKSHLPP 1913


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 292 CHIRFQTNTKCVAHKLLLLFRGYHHSCVSTD-REDIGPKIISG 167
           CHI+ Q + K V    LLL    H      D R+  G  +++G
Sbjct: 75  CHIKGQVSHKIVTDARLLLCNMTHRGATGADTRDGDGAGVMTG 117


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 240 SCSGATITLAFPPIVRISVQKSYPAFLRSPSVCM*IS 130
           S SG  +TLA     R S+ + Y  F+R   +CM IS
Sbjct: 785 SISGDLVTLAVE--CRSSITRVYKEFIRLSKLCMRIS 819


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 510 KSITMPLSSRPSNDVPMTMVVT 445
           ++I+ P+S R SND+P  +V T
Sbjct: 451 QTISTPVSGRASNDLPSPVVPT 472


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 23  QSTMLFKTLIFFCFAGASLAYRSYENY 103
           + ++ FK+LI      ++LA+R YENY
Sbjct: 50  KKSLQFKSLIRKYSEDSTLAWRDYENY 76


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +2

Query: 104 KVYNVVPTSEIHIQTLGD--LKKAGYDFWTDILTIGGNARVMVAPEQEQEFVSYALSVGL 277
           +V+ +V   ++ I T+GD  L K+  +     L IGG    + AP+Q     SY +    
Sbjct: 197 RVHELVEKVDVVIDTVGDPLLMKSALNQ----LGIGGRLSYISAPKQGSIEFSYDMKQIY 252

Query: 278 KPNVTISNVQALINSQLQ 331
           + N+ I    +L+ S ++
Sbjct: 253 RKNLKIIGCNSLLLSLVE 270


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 274 TNTKCVAHKLLLLFRGYHHSC 212
           +NT    HKL  L+RG  + C
Sbjct: 413 SNTNATQHKLSTLYRGMQNKC 433


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 510 KSITMPLSSRPSNDVPMTMVVTTPGYRVTSSS 415
           +S   P+SS+PS   P  M     G RV+SSS
Sbjct: 460 ESTKQPISSKPSTSSP-DMTDAATGGRVSSSS 490


>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 254 SYALSVGLKPNVTISNVQ 307
           S  LS G+ PN T+SN Q
Sbjct: 130 SLLLSSGISPNATVSNAQ 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,649
Number of Sequences: 5004
Number of extensions: 47443
Number of successful extensions: 129
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)