Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15o04f
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910           30   1.6  
02_05_1357 + 35899480-35899578,35900247-35900334,35900438-359005...    29   2.1  
05_05_0026 + 21645845-21647404                                         28   5.0  
02_04_0207 + 20933319-20933427,20933503-20933701,20933785-209339...    27   8.7  
01_03_0163 + 13346586-13347809                                         27   8.7  

>11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910
          Length = 1155

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = +2

Query: 353  STLGSFSWDRYYSLAQIHSWLDELVTL 433
            S+L S + +R+Y+ AQ+ +WL +LV+L
Sbjct: 1019 SSLESLTLERWYNQAQLPNWLGQLVSL 1045


>02_05_1357 +
           35899480-35899578,35900247-35900334,35900438-35900592,
           35900652-35900715,35902910-35902974,35903061-35903126,
           35903644-35903745
          Length = 212

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 380 RYYSLAQIHSWLDELVTLYPGVVTTMVIGTSFEGRELKGIVID 508
           R  SL  +H W+ EL    PG V  +++GT  + R+ K   +D
Sbjct: 105 RPLSLLSLHEWIPELRHYAPG-VPIILVGTKLDLRDDKQFFVD 146


>05_05_0026 + 21645845-21647404
          Length = 519

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 302 VQALINSQLQPATNARSSTLGSFSWDRYYSLAQIHSWLDELVTLYPGV 445
           V A I  ++      R  T  SF +D+   +  +H+ L E + L+P V
Sbjct: 337 VAAAIRDEVFRVAGGRDPTAASFDFDKLKDMHYVHAALYESMRLFPPV 384


>02_04_0207 +
           20933319-20933427,20933503-20933701,20933785-20933931,
           20934683-20934764,20935542-20935697,20935948-20936121,
           20936278-20936349,20937012-20937083,20937322-20937440,
           20937540-20937625,20937747-20937799,20938076-20938153
          Length = 448

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 367 LQLGQIL*SSSNSLMVR*AGHSVSWGRHYHG 459
           +++ QI    S+ L V  AGH  SWGR+ +G
Sbjct: 129 VRITQIACGDSHCLAVTVAGHVHSWGRNQNG 159


>01_03_0163 + 13346586-13347809
          Length = 407

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 273 PTLSA*LTN-SCSCSGATITLAFPPIVRISVQKSYPAFLRSPS 148
           P L+   TN SCSC+ A    A P +   ++   + +FL +P+
Sbjct: 252 PDLATGCTNESCSCNAAAAAAAMPAMYPPTLDTVHGSFLAAPA 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,493,407
Number of Sequences: 37544
Number of extensions: 301058
Number of successful extensions: 648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)