Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15o03r
         (920 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              23   3.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.8  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   9.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   9.0  

>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 733 LPKLGI-QAIFNRQNSGLTKILDNDEPLYVSKAVQK-AFIE 617
           + K GI + I N  N G   I D +  LY+  A++K +F++
Sbjct: 34  MAKTGINKQIINDVNDGKINIEDENVQLYIECAMKKFSFVD 74


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -3

Query: 429 AHINNERNTKKYLYYIPGVLILC*YCACVIRTQLFIYTQCNKQNKIECSHLT 274
           A    E+   K L  + GV I+C     V+       +QC  Q KI  + +T
Sbjct: 325 AKFAKEKKAAKTLGIVMGVFIICWLPFFVVNLWSGFCSQCIWQEKIVFAAVT 376


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 29  NIFNFSFTNSY*AKIYFYNI 88
           NI N++  N+Y  K+Y YNI
Sbjct: 92  NISNYNNNNNYNKKLY-YNI 110


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 29  NIFNFSFTNSY*AKIYFYNI 88
           NI N++  N+Y  K+Y YNI
Sbjct: 330 NISNYNNNNNYNKKLY-YNI 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 260,587
Number of Sequences: 438
Number of extensions: 5533
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)