Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15n24f
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    70   2e-14
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.7  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 70.1 bits (164), Expect = 2e-14
 Identities = 51/195 (26%), Positives = 96/195 (49%), Gaps = 9/195 (4%)
 Frame = +2

Query: 53  MTYDWKDKVVLITGGGNGIGSHVVRIALEEGAKEINILDINEANAKSLQDELNAKHGVGK 232
           M  +W D+V L+TG  +GIG  ++   + +G K I I        K+L +EL +K   GK
Sbjct: 1   MEQNWIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAP-QVDKMKTLVEELKSK--PGK 57

Query: 233 VKFIKCDVANHESLVAAFEAILSDKNNEYVVLNNAAI------LNDSLKTYRKQIDINVA 394
           +  ++CD++N   ++   E +  +     +++NNA I       ND +  ++K  DIN+ 
Sbjct: 58  LVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLL 117

Query: 395 AVITGSLKALDLMRXXXXXXXXAIINMSSIAALCPLPFT---PIYNATKSAVMQFSVCLG 565
            +     + L LM+         I+N++  + L  LP     P Y A+K A+   + CL 
Sbjct: 118 GLTCMIQEVLKLMK-KKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLR 176

Query: 566 ADDYYSRTGVRVLTM 610
           ++     + ++V+++
Sbjct: 177 SELAQCESNIKVISI 191


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 112  ISCSQDCTRGRGKGN*YIGHQRSKREIASRRTER 213
            +SC+  CT    K   Y  H   K E A +  +R
Sbjct: 1709 VSCASGCTAVETKSKPYKFHCMEKNEAAMKLKKR 1742


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 616 ETHS*YTNSSPRVVIVCAQT 557
           + HS  TNS PR+++  A T
Sbjct: 276 DEHSNRTNSDPRMILTEAYT 295


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 299 SDKNNEYVVLNNAAIL 346
           +D N EY +  N+AIL
Sbjct: 107 TDVNKEYAIRGNSAIL 122


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +2

Query: 254 VANHESLVAAFEAILSDKNNEYVVLNNAAILNDSLKTYRKQ 376
           ++  ES V   + + S K++ +  L N        +TY+KQ
Sbjct: 432 LSGDESDVVELQPVKSSKSSGWRKLRNIVHWTPFFQTYKKQ 472


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +2

Query: 494 CPLPFTPIYNATKSAVMQFSVCLGADDYYSR 586
           C L  TP Y    S++  +  C+     Y R
Sbjct: 184 CALDLTPTYAVVSSSISFYVPCIVMLGIYCR 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,740
Number of Sequences: 438
Number of extensions: 3544
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)