Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15n17f
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    32   0.066
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.9  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   2.5  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   4.3  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    26   4.3  
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    25   10.0 
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   10.0 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   10.0 

>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 31.9 bits (69), Expect = 0.066
 Identities = 11/46 (23%), Positives = 27/46 (58%)
 Frame = +1

Query: 385 LSEGGYPAKLKKVLIVTAPLWFKAPFRILRLFVREKLRERVHTVSA 522
           +S+  YP ++ K  ++ AP  F + F +++ F+ E   +++H + +
Sbjct: 195 ISQDYYPERMGKFYVINAPWGFSSAFNLIKGFLDEATVKKIHILGS 240


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -3

Query: 500 SRNFSLTNNRSIRKGALNQSGAVTINTFFNLAG*PPSDRQCG*KHQSLRLSLSIGYLMIN 321
           S +F+L+    +RK +  Q     INT F+     P+      KH    +S  + YL + 
Sbjct: 313 SLDFTLSIFERLRKDSSLQLTTKDINTLFSTIALSPTKLSMASKHSKNLVSERMLYLSLM 372

Query: 320 YLHLYD 303
           Y  L D
Sbjct: 373 YKSLVD 378


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 400 YPAKLKKVLIVTAPLWFKAPFRILRLFVREKLRERVHTVSAPQLGAHVPR 549
           +  K K  L++TA LW K  F    +F R        T+S    G ++PR
Sbjct: 858 FEVKTKDALMITANLWSKGKFNDHEIFGRSSF-----TLSPKIYGDYLPR 902


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -3

Query: 557 RLDRGTCAPSCGALTVCTRSRNFSLTNNRSIRKGALNQSGAVTINTFFNLAG 402
           ++D  T   +   L +C R  NF++    S ++   N SG +  NT   L G
Sbjct: 743 KVDVSTTLSTNDNLVLCWRDLNFTVVTKTSKKQILTNVSGYLKKNTLTALLG 794


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 9   RPSATRTHVSALFTTFRPWHFDNAYTLCANPIYIST 116
           R +A +  + + +TT + W F     LC+NPI + T
Sbjct: 45  RFNAVKKEIGSYYTT-KIWSFSLKCHLCSNPIDVHT 79


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 195 FHISAIVGCFVSRVLPFAVFNGY 263
           F  S+ + C++ R LPF+ FN Y
Sbjct: 9   FTSSSSLPCYILRHLPFSNFNRY 31


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 281  SLLHTVIAIKHCKRQHSTNKTTYNSTDME 195
            SL ++V+   + KRQ S+++T+Y  T+ E
Sbjct: 1116 SLRNSVLQSANSKRQTSSHRTSYWDTEAE 1144


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 257 WLSRCAIEKCSRLTINRINEDXXXXXXXXIETAEAIDAFNRI 382
           W+S+C I KC+        ED        I +AE   A+N I
Sbjct: 223 WISKCEISKCT------TTEDIFSYLKNLIPSAEKSPAYNYI 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,712
Number of Sequences: 5004
Number of extensions: 38100
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)