Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15n17f
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.8  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1

Query: 79  ALSKCHGRNV 50
           ALSKCH RNV
Sbjct: 707 ALSKCHNRNV 716


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +1

Query: 388 SEGGYPAKLKKVLIVTAPLWFKAPFRILRLFVREKLRERVHTVSAPQLGAH 540
           S  G  A  +  LIVTAPL  +    +L + +      R    + PQ G H
Sbjct: 313 SNPGGEASAEIRLIVTAPLHVEVTPPLLSVHLGGNAEFRCEVSTHPQAGPH 363


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +1

Query: 388 SEGGYPAKLKKVLIVTAPLWFKAPFRILRLFVREKLRERVHTVSAPQLGAH 540
           S  G  A  +  LIVTAPL  +    +L + +      R    + PQ G H
Sbjct: 313 SNPGGEASAEIRLIVTAPLHVEVTPPLLSVHLGGNAEFRCEVSTHPQAGPH 363


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 546 RHVRAKLRRANRVHAFP 496
           R + +++R  NR H FP
Sbjct: 218 RTIYSRVRNLNRTHGFP 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,899
Number of Sequences: 438
Number of extensions: 2724
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)