Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15n09r
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   4.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   8.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   8.1  

>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 71  NSQKHIIWLRLLHLTIFIIRCCSFT 145
           NSQ  I+ L +L LTI I+ C +FT
Sbjct: 3   NSQ--ILILFILSLTITIVMCQTFT 25


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 318 LINYMKCENLTTSDQLIFL 374
           LI Y +CEN  T+   IFL
Sbjct: 405 LIRYTRCENPKTNFFSIFL 423


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 256 KDWPHKSKKNNLFYIDINFKLLS 324
           KD+  +  KNNL    + FKL++
Sbjct: 46  KDFYRQDTKNNLLNAYVRFKLVT 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,603
Number of Sequences: 438
Number of extensions: 3991
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)