Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15n09f
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   4.2  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   5.6  

>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 132  LESKACFELYY*VKC*YFCNKYFRSDSKKCCILC 233
            +E + C E Y+  KC     K  R+D K  C +C
Sbjct: 1185 IECELCHEWYH-AKCMKMSKKKLRADEKFICPIC 1217


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -1

Query: 168 LSNIVQNKLCFLIYRNFNLKL*ITLAEWFINRSIKENTILNLIYDNIKSFTIQF 7
           +S I+++K   L  RN    L   LAE  + +    N  + L+  NI S  IQF
Sbjct: 73  ISEILKSKAESLRIRNSLATLQTFLAELSVRKPTDVNFTIFLLLGNIDSIDIQF 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,391
Number of Sequences: 5004
Number of extensions: 38847
Number of successful extensions: 64
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)