Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15n04f
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0501 - 29836545-29836640,29836752-29836855,29837034-298370... 48 8e-06
01_01_0589 + 4394154-4394513,4394641-4394762,4394862-4395057,439... 46 2e-05
05_06_0207 + 26377836-26378201,26379785-26379906,26380025-263802... 44 1e-04
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 30 1.8
01_06_1093 + 34471262-34471334,34474526-34476759 30 1.8
01_06_0838 + 32331588-32332346 29 2.3
05_05_0379 + 24518724-24518950,24519076-24519343,24519482-245196... 28 5.4
04_04_1287 - 32390422-32391588,32392472-32392645 28 5.4
04_04_1049 + 30414545-30414596,30414732-30414853,30415121-304151... 28 5.4
01_01_0833 - 6517489-6517503,6517762-6517827,6517938-6518006,651... 28 5.4
09_06_0246 + 21837144-21838194,21838692-21840038,21840576-218406... 28 7.1
09_04_0257 + 16170914-16171113,16171362-16171554,16171929-161720... 28 7.1
08_02_0810 + 21431719-21431869,21433661-21433704,21434432-21434704 28 7.1
05_07_0144 - 28007477-28008412 28 7.1
03_02_0326 + 7474352-7474448,7474913-7474977,7475105-7475191,747... 28 7.1
06_01_0946 + 7289182-7289226,7291366-7291441,7291542-7291655,729... 27 9.4
03_01_0601 + 4423831-4424115,4424278-4424406,4424615-4424779,442... 27 9.4
>01_06_0501 -
29836545-29836640,29836752-29836855,29837034-29837081,
29837188-29837305,29837812-29838007,29838089-29838210,
29839409-29839831
Length = 368
Score = 47.6 bits (108), Expect = 8e-06
Identities = 28/70 (40%), Positives = 38/70 (54%)
Frame = +1
Query: 421 EPKKVLLRIYGQVHGERAMDAIVTESVIFTLLSERRLGPKLHGVFSGGRIEEYIPARPLL 600
E +KVL+RIYG G E F +S GP+L G F+ GR+EE+I AR L
Sbjct: 87 EVRKVLVRIYGD--GVELFFDREDEVRTFECMSRHGQGPRLLGRFTNGRVEEFIHARTLS 144
Query: 601 TRELAEPALS 630
+L +P +S
Sbjct: 145 AADLRDPEIS 154
>01_01_0589 +
4394154-4394513,4394641-4394762,4394862-4395057,
4395275-4395392,4395499-4395546,4395691-4395791,
4395893-4396000
Length = 350
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/68 (41%), Positives = 36/68 (52%)
Frame = +1
Query: 427 KKVLLRIYGQVHGERAMDAIVTESVIFTLLSERRLGPKLHGVFSGGRIEEYIPARPLLTR 606
+KVL+RIYGQ G E F +S GP+L G F GRIEE+I AR L
Sbjct: 68 RKVLVRIYGQ--GVEVFFDRADEVRTFECMSRHGQGPRLLGRFPNGRIEEFINARTLSAA 125
Query: 607 ELAEPALS 630
+L + +S
Sbjct: 126 DLRDAEIS 133
>05_06_0207 +
26377836-26378201,26379785-26379906,26380025-26380220,
26380642-26380759,26380869-26380916,26380995-26381095,
26381178-26381285
Length = 352
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/68 (36%), Positives = 37/68 (54%)
Frame = +1
Query: 427 KKVLLRIYGQVHGERAMDAIVTESVIFTLLSERRLGPKLHGVFSGGRIEEYIPARPLLTR 606
++VL+R+YG+ G E F +S GP+L G F GR+EE+I AR L
Sbjct: 70 RRVLVRVYGE--GVELFFDREAEVRTFESMSRHGHGPRLLGRFPNGRVEEFIHARTLSAV 127
Query: 607 ELAEPALS 630
+L +P +S
Sbjct: 128 DLRDPEIS 135
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 443 GYTARSTARGP--WTRS*RNLSYSLCSPRGGWARSSTESS 556
GY++R ++ GP W RS S SPRGGW RS S
Sbjct: 154 GYSSRISSSGPDAWKRS-----RSPLSPRGGWNRSRRNRS 188
>01_06_1093 + 34471262-34471334,34474526-34476759
Length = 768
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 581 MYSSILPPEKT-PWSFGPSLLSESKVNMT 498
++ ++ P EKT W++GP L+ E +N++
Sbjct: 645 LFRTVCPGEKTLKWNYGPELIGEHSINIS 673
>01_06_0838 + 32331588-32332346
Length = 252
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Frame = +1
Query: 331 RESSPETELETAASKLVKKSMAR--SNSFSIEEPKKVLLRIYGQVHGERAMDAIVTESVI 504
RE + +T A+ S+A S+S S EP+ V ++ +++D + ESV+
Sbjct: 3 REGGRDDGDDTGAASTSPNSVANQSSSSSSSSEPEPVPFPVHRLARYSKSIDKAIRESVL 62
Query: 505 FTLLS----ERRLGPK 540
LLS +R L P+
Sbjct: 63 INLLSWSLEQRMLSPE 78
>05_05_0379 +
24518724-24518950,24519076-24519343,24519482-24519616,
24519795-24519860,24520073-24520138,24520294-24520350,
24520767-24520919
Length = 323
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 252 DQRRSLEFPVLRGASGRPVEALHVHETRKLTGNRTG 359
DQ SL P LR GRPV+ H + K+ GN G
Sbjct: 251 DQVASLSSPYLR--CGRPVQLQHQQGSHKVNGNCEG 284
>04_04_1287 - 32390422-32391588,32392472-32392645
Length = 446
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 331 RESSPETELETAASKLVKKSMARSNSFSIEEP 426
+E+SPETELET+ L S A NS EP
Sbjct: 365 KETSPETELETSKDSL---SEANQNSTQAVEP 393
>04_04_1049 +
30414545-30414596,30414732-30414853,30415121-30415198,
30415329-30415459,30415644-30417552,30417797-30417836,
30418194-30418259,30418583-30418734
Length = 849
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 141 ANVRHGSGNARSRRPNLQELPARSVEERG 227
+++ G G++ SRR +L P+ +V+ERG
Sbjct: 155 SSMERGGGSSSSRRRSLSREPSSAVQERG 183
>01_01_0833 -
6517489-6517503,6517762-6517827,6517938-6518006,
6518104-6518214,6518319-6518526,6518598-6518653,
6519048-6519689
Length = 388
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 259 GGLSNFLYYVALPE-DPSKLCTFTKRESSPETELETAASKLVKKSMARSNSFS 414
G + LY V L E DP L T +R E EL A + + S + S SFS
Sbjct: 54 GVVDGELYDVELEEGDPGMLWTGDERPVQTEEELYWACRNIRRSSTSTSGSFS 106
>09_06_0246 +
21837144-21838194,21838692-21840038,21840576-21840656,
21842740-21842924
Length = 887
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 558 WREDRRVHTGQTSLDPGTSRACPL 629
WRED ++ + S+D T AC L
Sbjct: 690 WREDLKIKSSDVSIDDSTRNACLL 713
>09_04_0257 +
16170914-16171113,16171362-16171554,16171929-16172034,
16172293-16172415,16172739-16172830,16173276-16173376,
16173458-16173524,16174016-16174108,16174247-16174375
Length = 367
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 187 ICRNYLHGAWKSVDPTELEFRRISGGLSN 273
IC+ + G W S+D + +SGG++N
Sbjct: 9 ICKELVRG-WSSLDSSRFSIETVSGGITN 36
>08_02_0810 + 21431719-21431869,21433661-21433704,21434432-21434704
Length = 155
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 508 TLLSERRLGPKLHGVFSGGRIEEYIPARPLLTRELAEPALSM 633
T ++R +G ++HG +GG + P RP R+ + A +M
Sbjct: 107 TAWTKRVIGIRVHGAIAGGSLPLTAPGRPRPNRDDVDAAGAM 148
>05_07_0144 - 28007477-28008412
Length = 311
Score = 27.9 bits (59), Expect = 7.1
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +1
Query: 130 AKKLQMCGTEAEMREVAARICRNYLHGAWKSVDPTELEFRRISGGLS-NFLYYVALPEDP 306
A L++C + AA++ +LH KS +P E S GL+ + Y A P D
Sbjct: 179 AASLRLCPLLSAAEREAAKLVEEFLHKKKKSPEPKPREKGEKSPGLAVRVVVYRASPLDV 238
Query: 307 SKLCTFTKRESSPETEL-ETAASKLVKKSM 393
+ T+R S+ T + + ++LV + +
Sbjct: 239 MAM-ELTRRLSNCHTIIRQKETTRLVDRGV 267
>03_02_0326 +
7474352-7474448,7474913-7474977,7475105-7475191,
7475393-7475440,7476086-7476142,7476588-7476687,
7476875-7477185,7477298-7477667,7478745-7478876,
7479362-7479575,7479650-7479710,7480098-7480292
Length = 578
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 328 KRESSPETELETAASKLVKKSMARSNSFSIEEPKKVLLRIYGQV 459
KRE+ E ++ K R N ++ P+KVL + +G+V
Sbjct: 369 KRETYSEVDVAVDVDSFPMKEKLRRNPLKMDIPEKVLSQAHGKV 412
>06_01_0946 +
7289182-7289226,7291366-7291441,7291542-7291655,
7291881-7292447,7293047-7293792
Length = 515
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 451 GQVHGERAMDAIVTESVIFTLLSERRLGPKLHGVFSGGRIEEYIPA 588
G VHGE+A A ES++ ++S LG KL + G E +P+
Sbjct: 362 GMVHGEKAKCATSIESLLDVVVSS--LGTKLVRALTPGAPMEGVPS 405
>03_01_0601 +
4423831-4424115,4424278-4424406,4424615-4424779,
4424925-4425230,4425387-4425448,4425776-4426145,
4426427-4426555,4427233-4427397,4427534-4427839,
4427928-4428068
Length = 685
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Frame = +3
Query: 459 PRREGHGRDRDGICHI------HFALREEAGPEAPRSLLWRED 569
P GHG DR+ CH+ H A E+ G E R LL E+
Sbjct: 203 PGYVGHGHDRESFCHVDDVVAGHVAAMEK-GREGERYLLTGEN 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,395,339
Number of Sequences: 37544
Number of extensions: 356785
Number of successful extensions: 1248
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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