Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15n04f
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.9  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 570 DPPAREDSVELRAQPPLGEQSEYDRF 493
           +PP R+++  L  +P LG+     +F
Sbjct: 339 EPPRRKNNCPLHCKPELGQSQSSPKF 364


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = -2

Query: 617 SASSRVKRG----LAGMYSSILPPEKTPWSFGPSLLSESKVNMTDSVTIASMALS 465
           + S+R K+G     +G  + I+PP+ +P++    L    +  +T SVT   + LS
Sbjct: 588 TCSARNKQGHSARRSGDVAVIVPPKISPFTADRDLHLGERTTLTCSVTRGDLPLS 642


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 298 PEAPRSTGNSRDRR*SS*TPIQLDPRSSTLRAGS 197
           P +P+S  +S  R   S   +Q+DP ++++ A +
Sbjct: 442 PLSPQSDSSSSSRSAESPMSVQVDPMAASVVAAA 475


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 474 HGRDRDGICHIHFALR 521
           HG  +D +  +HFALR
Sbjct: 152 HGDFKDPLIPVHFALR 167


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 474 HGRDRDGICHIHFALR 521
           HG  +D +  +HFALR
Sbjct: 152 HGDFKDPLIPVHFALR 167


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 474 HGRDRDGICHIHFALR 521
           HG  +D +  +HFALR
Sbjct: 203 HGDFKDPLIPVHFALR 218


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 474 HGRDRDGICHIHFALR 521
           HG  +D +  +HFALR
Sbjct: 152 HGDFKDPLIPVHFALR 167


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 40  TCIDIVFCLKR 72
           TC+++VF LKR
Sbjct: 232 TCLEVVFVLKR 242


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 358 PVRFPVSFRVS 326
           P +FP SFR+S
Sbjct: 404 PAKFPPSFRIS 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,148
Number of Sequences: 438
Number of extensions: 3163
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)