Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15m20f
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 81 2e-16
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.44
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb... 27 1.8
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 27 2.4
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 26 4.1
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 26 5.5
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 26 5.5
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 5.5
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.2
SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar... 25 7.2
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 25 9.5
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 25 9.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 9.5
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 80.6 bits (190), Expect = 2e-16
Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 1/180 (0%)
Frame = +3
Query: 102 TLNNVTRNTDLASQYVLPGESFPTFYDVSLFIDPANTVSFNGKVSIRIIPRIATNVIVVQ 281
T+ T D ++ +LP P YD+SL+ D T ++ GKV + + +N I +
Sbjct: 4 TIPKSTSKEDDKNRNLLPKNVKPIHYDLSLYPD-LETFTYGGKVVVTLDVLEDSNSITLH 62
Query: 282 AMEMTIRSISVFTDRSSNENLFASFTLATDDTHFLRISTRTQLLPDQPYIVNIDYESKYA 461
+ + I + ++ ++ ++AS D+ L+ + + ++ + + ++ +
Sbjct: 63 GINLRILTAAL---EWGSQTVWASEVSYGDERIVLQFPSTVPA--NSVAVLTLPFTARIS 117
Query: 462 PNMFGVYVSTY-QQNGRTVNLVTSQLQPTFARRAFPCYDEPAIKAIFRTTIYAPAAYTVV 638
M G Y S+Y +G T L T+Q++PT ARRAFPC+DEPA+KA F I A YT++
Sbjct: 118 SGMEGFYRSSYVDSDGNTKYLATTQMEPTSARRAFPCWDEPALKATFTIDITAKENYTIL 177
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 29.5 bits (63), Expect = 0.44
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 130 IWPPSMSYPENHSPRST--MSVYSLILPIPSVSTGRSASELSPGLQQMLSLS 279
I PPS + N SP T +V SLI PSVS+ S+S S LQ LS
Sbjct: 299 ISPPSANTVGNPSPADTPGFNVPSLISDDPSVSSSLSSSVASLSLQNSNILS 350
>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 476
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 329 APVSKNTNASNGHLHGLDNDNICCNPGDNSDADLPVETDGIG 204
AP ++ L GLDN+ P N+ A L E DG G
Sbjct: 266 APEQPKQESAMIDLLGLDNEPSPAQPQTNTSAPLAFEDDGFG 307
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 27.1 bits (57), Expect = 2.4
Identities = 8/26 (30%), Positives = 20/26 (76%)
Frame = -2
Query: 563 ECTAGKRWLKLRSYQIYSSSILLVCR 486
+CT+G +++LRS Q+ +++++ C+
Sbjct: 628 KCTSGPGYVQLRSGQLVGTALMIFCK 653
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 617 CVYGSSENSFDSRLIVARECTAGKRWLKLRSYQIYSSSILLVCRYI 480
CV G+ ++ + L GKR L L +Y I S S + + RYI
Sbjct: 68 CVDGTYWSAEEKELFFQAVARNGKRDLDLIAYSIPSKSAVQIERYI 113
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.8 bits (54), Expect = 5.5
Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 7/142 (4%)
Frame = +3
Query: 36 TLDMYLLLITALLGSAYSF-----PTSTLNNVTRNTDLASQYV--LPGESFPTFYDVSLF 194
T + +T+++ S SF + L+N + NTDL+SQ+ S + D S
Sbjct: 14 TFRFFCYFLTSVVASDVSFLGDFSGFNVLSNSSANTDLSSQFFEQTNNGSLSSLIDTSYS 73
Query: 195 IDPANTVSFNGKVSIRIIPRIATNVIVVQAMEMTIRSISVFTDRSSNENLFASFTLATDD 374
S+ G + + ++ V++ S+ +F+ S N + F + + D
Sbjct: 74 NSQICYSSWQGDLYVIVLDSEQQTVLLQSNFTSNPTSLEIFS--SQNTSFFGNISAIFCD 131
Query: 375 THFLRISTRTQLLPDQPYIVNI 440
F + T D+P +I
Sbjct: 132 DKF-PYAYATFTFSDKPSFTSI 152
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 611 YGSSENSFDSRLIVARECTAGKRWLKLRSYQIYSSSILLVCRYIYS 474
Y E S SRL++ + K+ KL + I+ ++ VC+ +YS
Sbjct: 801 YSVKEFSHVSRLLLWHGRISYKQTSKLAMFVIHRGLLISVCQVVYS 846
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 372 DTHFLRISTRTQLLPDQPYIVNI 440
DT FL++ T LPD Y+ +
Sbjct: 274 DTFFLKVPASTDKLPDPEYVARV 296
>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 377
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 186 SLFIDPANTVSFNGKVSIRIIPRIATNVIVVQAM 287
SL P VSF+G+ S+ I ++ IVV+ M
Sbjct: 271 SLLSKPICDVSFDGQFSLYIAHQLILETIVVEVM 304
>SPBC1709.16c |||aromatic ring-opening dioxygenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 285
Score = 25.4 bits (53), Expect = 7.2
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = +3
Query: 168 PTFYDVSLFIDPANTVSFNGKVSIRIIPRIATNVIVVQAMEMTIRSISVFTDRSSNENLF 347
P FYD F D + F+ K S RI + I+ E I + +V DR + +F
Sbjct: 87 PLFYDYYGFPDYLYQIKFHSKGSKRI-----ADQIISALKEYQIPAKTVSGDRGLDHGVF 141
Query: 348 ASFTLATDD 374
F + D
Sbjct: 142 VPFKIMFPD 150
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 480 YVSTYQQNGRTVNLVTSQLQPTFARRAFPCYDEPAIK 590
++ Q G V S+ Q AR PC D P++K
Sbjct: 119 FLKPEQTIGGKFPYVFSECQAIHARSFIPCQDTPSVK 155
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 182 CQFIH*SCQYRQFQREGQHQNYPQDCNK 265
CQ + +C YRQF R+ + Y D +K
Sbjct: 33 CQKYNENCVYRQFYRKIKRLKYNNDNSK 60
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 512 SSSILLVCRYIYSEHVGRVFRFIINVHNIRLVWKELCSGTDS 387
S S+ + Y YS H+ V F N + + WK+L S
Sbjct: 1957 SCSLPIETAYYYSIHIRPVSEFKFNWTSEAISWKDLVDNKQS 1998
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,992
Number of Sequences: 5004
Number of extensions: 64197
Number of successful extensions: 223
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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