Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15m16f
(355 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0838 - 28550036-28550237,28550595-28550676,28550972-285510... 27 3.2
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16... 26 7.4
04_04_0584 + 26381220-26381232,26381583-26381594,26381921-263820... 26 7.4
01_07_0167 - 41613834-41613842,41614060-41615056,41615456-416163... 26 7.4
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 26 9.8
06_02_0106 - 11898493-11901471 26 9.8
04_04_1553 - 34363848-34366058,34369087-34370451 26 9.8
>04_04_0838 -
28550036-28550237,28550595-28550676,28550972-28551011,
28551342-28551416,28551448-28551543,28551710-28551805,
28551897-28551974,28552064-28552170,28552450-28552477,
28552777-28552898,28554106-28554172,28554336-28554508,
28554763-28554846,28555616-28555733,28556093-28556164,
28557026-28557118,28557484-28557636,28558000-28558086,
28559436-28559528,28560416-28560643,28561106-28561207,
28561390-28561596,28561798-28561846,28562385-28562537,
28562649-28562712,28562905-28563175,28564008-28564072,
28564184-28564337
Length = 1052
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -3
Query: 92 GSTPNTGLYDILPNGPV-GNPCNCSDHFDF 6
GS PN DI+P P NP +H DF
Sbjct: 92 GSPPNKAAPDIVPQAPAEENPTPIREHVDF 121
>07_01_0024 +
159839-159923,160395-160442,160884-160895,161347-161427,
161530-161675,161918-161965,162054-162203,165647-165706,
165788-165859,165960-166409,166640-166839,167239-168236,
168676-168683,169057-169230,169341-169659,169748-169824,
169897-169966,170040-170111,170204-170418,170540-170665,
170751-171046,171133-171157,171163-171303,171400-171498,
171571-171702,171793-171912
Length = 1407
Score = 26.2 bits (55), Expect = 7.4
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 RKIKMIGAVARISNRTVGKNVVKTSVRSGSNGGIPGE--NLPFDINNKARLTFHMFWFFG 176
+ + +G R N V +R PG L D NNK + MFW G
Sbjct: 395 KDVSNVGTTINSETRNTDMNQVMEYLRQ-KEAKDPGYYYKLTLDENNKVK---SMFWTDG 450
Query: 177 SGFAAPFLVVWHQM 218
S A F +W QM
Sbjct: 451 SLTRAEFESLWLQM 464
>04_04_0584 +
26381220-26381232,26381583-26381594,26381921-26382028,
26382137-26382217,26382320-26382465,26382550-26382624,
26382709-26382756,26382845-26382994,26383081-26383140,
26383394-26384274,26384674-26385670,26385887-26385895
Length = 859
Score = 26.2 bits (55), Expect = 7.4
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 RKIKMIGAVARISNRTVGKNVVKTSVRSGSNGGIPGE--NLPFDINNKARLTFHMFWFFG 176
+ + +G R N V +R PG L D NNK + MFW G
Sbjct: 469 KDVSNVGTAINSETRNTDMNQVMEYLRQ-KEAKDPGYYYKLTLDENNKVK---SMFWTDG 524
Query: 177 SGFAAPFLVVWHQM 218
S A F +W QM
Sbjct: 525 SLTRAEFESLWLQM 538
>01_07_0167 -
41613834-41613842,41614060-41615056,41615456-41616336,
41616437-41616508,41616590-41616649,41616736-41616885,
41616974-41617021,41617107-41617181,41617266-41617411,
41617514-41617594,41617703-41617810,41618046-41618057,
41618137-41618148,41618499-41618546,41619021-41619105
Length = 927
Score = 26.2 bits (55), Expect = 7.4
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 RKIKMIGAVARISNRTVGKNVVKTSVRSGSNGGIPGE--NLPFDINNKARLTFHMFWFFG 176
+ + +G R N V +R PG L D NNK + MFW G
Sbjct: 537 KDVSNVGTAINSETRNTDMNQVMEYLRQ-KEAKDPGYYYKLTLDENNKVK---SMFWTDG 592
Query: 177 SGFAAPFLVVWHQM 218
S A F +W QM
Sbjct: 593 SLTRAEFESLWLQM 606
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 25.8 bits (54), Expect = 9.8
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 73 PVLGVDPTAVFPGRICHSTS---IIRLA*PSTCSGSSAADLQ 189
P+ PT V + S+ ++RLA + C G++AAD+Q
Sbjct: 1047 PLFFTSPTQVHTAKATMSSCTAFLVRLAAVAVCCGANAADVQ 1088
>06_02_0106 - 11898493-11901471
Length = 992
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 9 IKMIGAVARISNRTVGKNVVKTSVRSGSN 95
I +I +++ I + TVG++V ++RSG N
Sbjct: 550 IALISSLSAIEDITVGESVHSLAIRSGCN 578
>04_04_1553 - 34363848-34366058,34369087-34370451
Length = 1191
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 126 DINNKARLTFHMFWFFGSGFAAPFLVVWH 212
+++++ R TF +F +GFA L VW+
Sbjct: 1119 EMSSETRFTFGLFLTVEAGFAFGLLTVWN 1147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,347,199
Number of Sequences: 37544
Number of extensions: 185350
Number of successful extensions: 437
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -