Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15m11f
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    28   1.1  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    26   4.4  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    26   5.8  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   7.6  

>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 527 GRSDRDWNSEAQNGYIPFIHDPEFDCNRSTLREERLDEHSQR 402
           G SD    +E +N  IPF  DP + C+   L ++R++ +  R
Sbjct: 238 GVSDATREAERKNAIIPFTEDP-YACSNPLLVKKRMERNPFR 278


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 510 ITIAPPLTGPTKTHHLRIEHVYNATKLDDASVQHA 614
           I+ +PPLT P KT    I ++   ++LD ++  H+
Sbjct: 461 ISSSPPLTSPVKT-SANIPNLLPTSELDSSNAPHS 494


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 348 NFLTNTYCPLLAGE-VATYTLRMFI 419
           N+LT++Y PLL+G  VA +TL  FI
Sbjct: 437 NYLTDSY-PLLSGSAVAAFTLPSFI 460


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 138 NEGDLPINTYIHGCSEPPCSLPQLQDCVIDIVFQAPRVLRNMKTLVTA 281
           +EG L  +   HGC+ PP SL QL    +D    +PR  R  +++  A
Sbjct: 271 SEGTLYDSNVAHGCTHPP-SLNQLNKFHLD---ASPRQARPRRSVSLA 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,257
Number of Sequences: 5004
Number of extensions: 59646
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)