Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15m11f
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical...    33   0.19 
AM748823-1|CAO72177.1|  491|Caenorhabditis elegans hexosaminidas...    30   1.7  
AC103567-3|AAL35732.2|  438|Caenorhabditis elegans Hypothetical ...    30   1.7  
U80031-3|AAB37613.1|  524|Caenorhabditis elegans Hypothetical pr...    29   4.0  

>AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical
           protein C08F1.8 protein.
          Length = 600

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 25/86 (29%), Positives = 41/86 (47%)
 Frame = +3

Query: 273 VTAYMNLGVINLPIPYDLGEHAITCNFLTNTYCPLLAGEVATYTLRMFIEPFFPQGTAVT 452
           +TA M   V NL +   + + + TC+ +  T   LL    ATY+ +MF+  FF    A  
Sbjct: 455 ITALMGYAVCNLLVLL-VEQLSETCSPMNYT---LLKTTKATYSQKMFMAIFFAITEAYY 510

Query: 453 VEFRVVDERNVPVLCLRVPITIAPPL 530
           +    VD  ++P  C+ +    A P+
Sbjct: 511 IGLCYVDTSSLPNFCVMIAFDYAIPV 536


>AM748823-1|CAO72177.1|  491|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 491

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -1

Query: 320 VRDRQIDDSQVHVGRD*RFHIAKNARCLE 234
           +R    + +++H+G D  +H+A++ RC+E
Sbjct: 175 IRRLHPNSTRIHIGADEAYHVAEDQRCIE 203


>AC103567-3|AAL35732.2|  438|Caenorhabditis elegans Hypothetical
           protein Y51F10.5 protein.
          Length = 438

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -1

Query: 320 VRDRQIDDSQVHVGRD*RFHIAKNARCLE 234
           +R    + +++H+G D  +H+A++ RC+E
Sbjct: 175 IRRLHPNSTRIHIGADEAYHVAEDQRCIE 203


>U80031-3|AAB37613.1|  524|Caenorhabditis elegans Hypothetical
           protein B0554.4 protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 334 CSPRS--YGIGRLMTPRFM*AVTNVFILRRTRGAWNTMSITQSCSC 203
           CSP+S  YG+G   TP+F   V     +    GA  T+S T   SC
Sbjct: 417 CSPKSLTYGVGDNQTPQFQIDVGYSDFMTTPNGATETIS-TMKISC 461


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,081,029
Number of Sequences: 27780
Number of extensions: 361910
Number of successful extensions: 887
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)