Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15m10f
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    30   1.4  
Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog...    29   2.4  
AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr...    28   5.5  
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond...    28   5.5  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U41034-4|AAY43995.1|  385|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical p...    27   9.6  
AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical ...    27   9.6  
AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 268 protein.
          Length = 881

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 26/112 (23%), Positives = 44/112 (39%)
 Frame = -2

Query: 536  TSPIVIAAPMSLTMMLSARETEAVASAMTFSRASPPEAKDLRTRLKMRISPSAEPTDAET 357
            T P V   P+S   +  +       SA    + +    K     +K  +S SA P+   T
Sbjct: 768  TVPKVTVVPVSRVPVAPSTPLSRRMSAPVVRKPTMTAEKKREITMKPSVSTSARPSLINT 827

Query: 356  LGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSDAPGGLQEPA*P 201
                  + S +P      K + L+ +  T + +   +  S  P GL++PA P
Sbjct: 828  SSHPMVR-SPLPKMSVLEKPKPLRITRPTVIPQSPTVTSSARPSGLRQPAKP 878


>Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical
           protein F10B5.4 protein.
          Length = 426

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 217 WSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYV 321
           W+    S ++NF GRVT     +F  +H     Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386


>AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog
           protein.
          Length = 426

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 217 WSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYV 321
           W+    S ++NF GRVT     +F  +H     Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386


>AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical
           protein ZK1055.7 protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 491 LSARETEAVASAMTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGT 348
           +S + T      +   + + P + D + R+K+ +SP+A P DAE  GT
Sbjct: 471 ISIKNTRNEQPVLLTVKHAIPRSTDEKIRVKL-VSPAATPYDAEKAGT 517


>Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical
           protein C04A11.2 protein.
          Length = 439

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = -2

Query: 536 TSPIVIAAPMSLTMMLSARETEAVASAMTFSRASPPEAKDLRTRLKMRISPSAEPTDAET 357
           ++P+V      LT   SAR +   AS       +P   +++R       S +  P    T
Sbjct: 153 STPVVRNILQQLTTPRSARTSTRAASGNRTPTGTPNMTRNVRPVTNRTSSSNVSPAAQVT 212

Query: 356 LGTARTKLSRVP 321
            GT+    SR+P
Sbjct: 213 PGTSSNHRSRLP 224


>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
            R13G10.1 protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 58   LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 201
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
            condensation protein protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 58   LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 201
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/88 (21%), Positives = 37/88 (42%)
 Frame = -2

Query: 485 ARETEAVASAMTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT*LTR 306
           A + E  +S     ++   EAK  +   K  + PSA  +D  +  T  T +++ P   T+
Sbjct: 689 AEKPEGSSSGSATEKSKEIEAKSKKDDTKKPLEPSAASSDPSSSSTTTTTITKEPP--TQ 746

Query: 305 RKCRELKSSALTSVTRPEKLMMSDAPGG 222
                  ++A  +  +P +   + A  G
Sbjct: 747 SASASGAAAAAAASAQPSESSSATAASG 774


>Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical
           protein C15C6.3 protein.
          Length = 541

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 18/78 (23%), Positives = 29/78 (37%)
 Frame = -2

Query: 536 TSPIVIAAPMSLTMMLSARETEAVASAMTFSRASPPEAKDLRTRLKMRISPSAEPTDAET 357
           T P   A P  L +     + + +   + +   +PP     + R K   +PSA   DA  
Sbjct: 82  TDPDKRAIPSLLDIRTHKPQMKDLGPQVIYPNRAPPNPSSSQNRFKRDSAPSAPARDAPM 141

Query: 356 LGTARTKLSRVPT*LTRR 303
                    + P  +TRR
Sbjct: 142 FRGRTISQRQAPPQITRR 159


>U41034-4|AAY43995.1|  385|Caenorhabditis elegans Hypothetical
           protein M02D8.7 protein.
          Length = 385

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 572 SRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETE 471
           S PK  I R++  SP+V  AP+ +  +L    TE
Sbjct: 330 SDPKTYIARIEALSPVVRMAPLRILDILERTRTE 363


>U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK1290.10 protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
 Frame = -2

Query: 548 RLDLTSPIVIAAPMSLTMM-LSARETEAVASAMTFSRASPPEAKDLRTRL------KMRI 390
           RLD T P+  A P+ L ++ ++ +E +  AS +T   A+PP A+     +      +  +
Sbjct: 59  RLDNTIPVPPALPIGLPIIQITTKEPQPPAS-LTSLPAAPPSAQVAPPAIRPPEAKRTSL 117

Query: 389 SPSAEPTDAETLGTARTKLSRVPT 318
            P    T   ++ +  T L R PT
Sbjct: 118 EPPQPSTPQASISSTTTVLIRNPT 141


>AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical
           protein Y45G12C.11 protein.
          Length = 779

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 205 YAGSWSPPGASDIINFSGRVTDV 273
           + GSW P   SD INF+  +T +
Sbjct: 511 FCGSWYPDEFSDDINFTSTITPI 533


>AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical
           protein F56A4.6 protein.
          Length = 796

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 205 YAGSWSPPGASDIINFSGRVTDV 273
           + GSW P   SD INF+  +T +
Sbjct: 528 FCGSWYPDEFSDDINFTSTITPI 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,523,372
Number of Sequences: 27780
Number of extensions: 219647
Number of successful extensions: 669
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)