Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15m07f
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical pr...    80   2e-15
Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical pr...    54   1e-07
AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical...    34   0.076
AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and...    34   0.076
U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U80455-8|AAB37886.1|  337|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AC087081-5|AAK66038.1|  273|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical
           protein C26F1.7 protein.
          Length = 175

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 47/117 (40%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
 Frame = +1

Query: 115 CIFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADKELLNR 294
           C FC+I    +  + L E+    V  DIKP ++ H L + K+HI     LT AD  LL  
Sbjct: 11  CKFCDIVKNKKELQ-LKENKSCVVINDIKPKAKNHYLVLSKQHIAKPTDLTVADVPLLEE 69

Query: 295 MMSISRELLSKNNL------SIEDA-RFGYHWPPFRSVKHLHLHTIAPESEMGFIGR 444
           M    RELL ++        ++ED  R G+H PP  SV HLH+H I P S+MG I R
Sbjct: 70  MEKTGRELLREHLKKKGEADTVEDMLRIGFHLPPLLSVHHLHMHIIYPISDMGLISR 126


>Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical
           protein F21C3.3 protein.
          Length = 130

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
 Frame = +1

Query: 118 IFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADKELLNRM 297
           +F  I  K    +I++EDDE   F D+ P +  H L IPKR I+ +++   +D  L+ ++
Sbjct: 22  LFGKIIRKEIPAKIIFEDDEALAFHDVSPQAPIHFLVIPKRRIDMLENAVDSDAALIGKL 81

Query: 298 M----SISRELLSKN--NLSIEDARFGYHWPPFRSVKHLHLHTI 411
           M     ++++L   N   + + + + G      +SV HLHLH +
Sbjct: 82  MVTASKVAKQLGMANGYRVVVNNGKDG-----AQSVFHLHLHVL 120


>AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical
           protein Y56A3A.13 protein.
          Length = 440

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
 Frame = +1

Query: 157 ILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADKELLNRMMSISRELLSK-NN 333
           I Y      VF ++KP +  H+L  PKR +  +  LT A+   L  +    + +L K +N
Sbjct: 311 IFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHN 370

Query: 334 LSIEDARFGYHWPPFRSVKHLHLHTIAPESEMGFIGRVIFKKNSYWFVSPE 486
           ++             ++V H+H+H I P     F    I++K +     PE
Sbjct: 371 VTSTTICVQDGKDAGQTVPHVHIH-ILPRRAGDFGDNEIYQKLASHDKEPE 420


>AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and
           fragile histidinetriad fusion protein NitFhit protein.
          Length = 440

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
 Frame = +1

Query: 157 ILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADKELLNRMMSISRELLSK-NN 333
           I Y      VF ++KP +  H+L  PKR +  +  LT A+   L  +    + +L K +N
Sbjct: 311 IFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHN 370

Query: 334 LSIEDARFGYHWPPFRSVKHLHLHTIAPESEMGFIGRVIFKKNSYWFVSPE 486
           ++             ++V H+H+H I P     F    I++K +     PE
Sbjct: 371 VTSTTICVQDGKDAGQTVPHVHIH-ILPRRAGDFGDNEIYQKLASHDKEPE 420


>U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical
           protein C12D5.2 protein.
          Length = 383

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 390 TFASAYYSA*IRDGIHWKSDIQKKLLLVCFAGICRLYFNVKCNWSLNKLFY 542
           TFA  +Y+  +R G+H+   +  K++ +C   I  L  N +      + FY
Sbjct: 267 TFAMVFYAL-MRVGVHYIEYLLLKMIFICNPAIPNLSSNAQYKLEKGRSFY 316


>U80455-8|AAB37886.1|  337|Caenorhabditis elegans Hypothetical
           protein T01D1.5 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +1

Query: 220 ILTIPKRHIEDVKSLTSADKELLNRMMSISRELLSKNNLSIEDARFGYHWPPFRSVKHLH 399
           ++T+  R+I+ V+         +N + S+   LLSK      D  F     P  SV   +
Sbjct: 51  VVTLQTRYIDKVQENLILYNAAMNGLFSLCA-LLSKQEFLFGDRSFTIRAKPHSSVLAPY 109

Query: 400 LHTIAP 417
           +H I P
Sbjct: 110 IHCIQP 115


>AC087081-5|AAK66038.1|  273|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.15 protein.
          Length = 273

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +1

Query: 157 ILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADKELLNRMMSISRELLSK 327
           IL  D+  C+F  ++  S+FH  T+   HI       S    LL   ++I+ ++L K
Sbjct: 5   ILGIDNVTCLFETMEN-SKFHTFTLIFPHISLKSKKMSGSPTLLELPITIANQILEK 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,877,702
Number of Sequences: 27780
Number of extensions: 280478
Number of successful extensions: 563
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)