Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15m02r
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.6  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   8.6  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 462 LVSWIPFCQLYQSKKY 509
           +V W PF Q Y+ ++Y
Sbjct: 225 IVHWTPFFQTYKKQRY 240


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 462 LVSWIPFCQLYQSKKY 509
           +V W PF Q Y+ ++Y
Sbjct: 140 IVHWTPFFQTYKKQRY 155


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 462 LVSWIPFCQLYQSKKY 509
           +V W PF Q Y+ ++Y
Sbjct: 459 IVHWTPFFQTYKKQRY 474


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 498 SKKYSFDSSVFMFEKIS*WKNK*NYAILVLL 590
           S+ Y+  S +F+F+ ++ + N+ NY+  V L
Sbjct: 110 SENYTGISDLFVFDDLNDYINRLNYSAFVNL 140


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 251 VYIFHVLLSYCITTIFL 201
           V++F  L+ YC+  I L
Sbjct: 316 VFVFMALMEYCLVNIVL 332


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 720  PYSAEANETFYSVPVEETRLLRVVSGRIQ*SW 815
            P   +  E   S+P E+ R   + S  +Q SW
Sbjct: 1101 PLLTQTMEDVPSIPPEDVRCAALTSQSLQVSW 1132


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 720  PYSAEANETFYSVPVEETRLLRVVSGRIQ*SW 815
            P   +  E   S+P E+ R   + S  +Q SW
Sbjct: 1097 PLLTQTMEDVPSIPPEDVRCAALTSQSLQVSW 1128


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -3

Query: 582 PKLHNFICFSITIFSQT*IQNYQNCTFYSDKVGRTESKKLSITR 451
           P+L + +   + +  Q  IQN +     SD+V   E++K ++++
Sbjct: 317 PELQHNLNILVDMCEQDIIQNDRRTRHLSDRVVALEAEKKNLSK 360


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/25 (24%), Positives = 15/25 (60%)
 Frame = -1

Query: 665 PRTVQEIEEFMSNGSNFNKELKFNV 591
           P+ +  +     + +N+NK+L +N+
Sbjct: 312 PKIISSLSNNTIHNNNYNKKLYYNI 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,027
Number of Sequences: 438
Number of extensions: 4455
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)