Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15m02f
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...   169   2e-42
AL117195-4|CAB55010.1|  571|Caenorhabditis elegans Hypothetical ...    33   0.13 
AF063007-3|AAC16431.2|  362|Caenorhabditis elegans Hypothetical ...    31   0.70 
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr...    31   0.92 
AL032646-1|CAA21676.1|  385|Caenorhabditis elegans Hypothetical ...    29   3.7  
X59156-1|CAA41870.1|   77|Caenorhabditis elegans transposase pro...    28   6.5  
U80836-15|AAB37898.1|  264|Caenorhabditis elegans Hypothetical p...    28   6.5  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    28   6.5  
AF067217-5|AAO38635.1|  856|Caenorhabditis elegans Hypothetical ...    28   6.5  
AF067217-4|AAF99978.1|  887|Caenorhabditis elegans Hypothetical ...    28   6.5  
AF047657-8|AAK18944.1|  328|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score =  169 bits (410), Expect = 2e-42
 Identities = 94/212 (44%), Positives = 127/212 (59%), Gaps = 9/212 (4%)
 Frame = +2

Query: 23  TWSMGPGTLEVPLSLFATNRRRLANKLKS----GQIVVLQGGEDVNHYDTDVQYV-FRQE 187
           T+ +   T +VP+ LF  NR RL + LKS      +V+LQGG + N Y+TD   + FRQE
Sbjct: 2   TFQLSEKTFKVPVDLFTENRHRLVDALKSKVPANSVVLLQGGVEKNRYNTDAADLPFRQE 61

Query: 188 AYFTWVCGVREPGCYFALDV-STGKSYLFVPRLPEEYEVWMGKLHACSDFKNIYAVDEVY 364
           +YF W  GV E   Y A+DV S GK+ LF PRL   Y +W GK++    FK  YAVDEV 
Sbjct: 62  SYFFWTFGVNESEFYGAIDVRSGGKTTLFAPRLDPSYAIWDGKINNEQFFKEKYAVDEVV 121

Query: 365 YVDE---IKDVLKSLMPETLLTLSGPNTDSGLTAREAIFNGIDEFNVDNESLFPIIAELR 535
           + D+   I + LK L  + +  L   NTDSG    E  F G  +F +D E L+  +AELR
Sbjct: 122 FNDKTTTIAEKLKELSAKHVYLLRAENTDSGDVLAEPKFAGSGDFQLDTELLYKEMAELR 181

Query: 536 VIKTPEEIAVMRYVCKVSSDAHKQVMLYAKPG 631
           V+KT +EI VMRY  K++S+AH+  M + +PG
Sbjct: 182 VVKTEKEIGVMRYASKIASEAHRAAMKHMRPG 213


>AL117195-4|CAB55010.1|  571|Caenorhabditis elegans Hypothetical
           protein Y57A10A.5 protein.
          Length = 571

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +2

Query: 362 YYVDEIKDVLKSLMPETLLTLSGPNTDSGLTAREAIFNGIDEFNVDNESLFPIIAELRVI 541
           + VD+ KD+++ L+   +LT    + + GL+    ++     +N  +E L PI+A+L   
Sbjct: 14  FAVDQTKDIIEPLVVAKVLTEFSESENDGLSCN--VY-----YNRFHEYLAPIMAKLEEY 66

Query: 542 KTPEEIAVM-RYVCKVSSDAHKQV 610
           +  E + VM  +  +VS+D   Q+
Sbjct: 67  RIEERVLVMFGFAAEVSNDFRTQI 90


>AF063007-3|AAC16431.2|  362|Caenorhabditis elegans Hypothetical
           protein R119.2 protein.
          Length = 362

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
 Frame = +2

Query: 266 LFVPRLPEEYEVWMGKLHACSDFKNIYAVDEVYYVDEIKDVLKSLMPE-TLLTLSGPNTD 442
           LF  R     E+W G L   S+++      E      I   L+ +  + T +     + D
Sbjct: 15  LFADRRSAYDELWEGALPTESEWEKTAKFTECVPTSRILQTLEKVCDKGTAVFFDSTSDD 74

Query: 443 SGLTAREAIFNGIDEFNVDNESLFPIIAELRVIKTPEEIAVMRYVCKVSS 592
                 +A  N + E N         I   RVIK+P E++ MR VC V +
Sbjct: 75  LLYKFVQAKANSVREIN-------HFIERRRVIKSPSEMSSMRDVCNVGA 117


>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical
           protein C08B11.3 protein.
          Length = 1244

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 466 GFSGRQATVCVWARQCQQCFRHQTFEYIFYLINIIDFINCIYVFE 332
           GF G +A +C W           T  +IF ++ + D + C+Y  E
Sbjct: 395 GFEGNEAIICDWLNSA-------TIAHIFEVVGVKDIMMCVYTLE 432


>AL032646-1|CAA21676.1|  385|Caenorhabditis elegans Hypothetical
           protein Y54E2A.2 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 430 ARQCQQCFRHQTFEYIFYLINIIDFINC--IYVFEVTTGM 317
           +R+  +  RHQT +   Y++N   F++C  +Y F +  G+
Sbjct: 124 SREANEQSRHQTIQIDIYIVNHQIFLDCQPMYSFSIMEGL 163


>X59156-1|CAA41870.1|   77|Caenorhabditis elegans transposase
           protein.
          Length = 77

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 427 RQCQQCFRHQTFEYIFYLINIIDFINCIYVFEV 329
           R+C   +    F++IF+  NI      +++FE+
Sbjct: 38  RRCFSAYFLNFFQFIFFFFNIFQLFYVVFLFEI 70


>U80836-15|AAB37898.1|  264|Caenorhabditis elegans Hypothetical
           protein B0432.1 protein.
          Length = 264

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 394 FEYIFYLINIIDFINCIYVFEVTTGMEFAHPDFI 293
           F  IFY I I D ++CI +F +T      H D +
Sbjct: 60  FYRIFYYIGIADVLHCICLFWMTFQKYVIHGDIL 93


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
           protein Y53C10A.10 protein.
          Length = 1582

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 615 NITCLCASDETLHTYRITAISSGVLITRNSAIMGNKDSLSTLNSSIP 475
           NITCL   +       I  +  G ++ RN     ++ S S+L+ S P
Sbjct: 419 NITCLAGGETDTDVLIIEVLPGGGVVIRNGTDSKDESSGSSLSKSTP 465


>AF067217-5|AAO38635.1|  856|Caenorhabditis elegans Hypothetical
           protein F56A6.1b protein.
          Length = 856

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
 Frame = +2

Query: 365 YVDEIKDVLKSLMPETLLTLSGPNTDSGLTAREAI--FNGIDE--FNVDNESLFPIIAEL 532
           YV   +DV  S++ +TLLT+    T+      + +  FNG+ E  F++ NE     + E 
Sbjct: 661 YVHRDRDVFGSIIKDTLLTIFKTCTEQRGRPDDILLYFNGVSEGQFSMINEEFSARVKEA 720

Query: 533 RVIKTPEEIAVMR--YVCKVSSDAHKQVMLYAKPGRM 637
            +    E     R       SS AH + +  +  GR+
Sbjct: 721 CMAFQKEGTPPFRPHITIIASSKAHNERLYKSDKGRI 757


>AF067217-4|AAF99978.1|  887|Caenorhabditis elegans Hypothetical
           protein F56A6.1a protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
 Frame = +2

Query: 365 YVDEIKDVLKSLMPETLLTLSGPNTDSGLTAREAI--FNGIDE--FNVDNESLFPIIAEL 532
           YV   +DV  S++ +TLLT+    T+      + +  FNG+ E  F++ NE     + E 
Sbjct: 661 YVHRDRDVFGSIIKDTLLTIFKTCTEQRGRPDDILLYFNGVSEGQFSMINEEFSARVKEA 720

Query: 533 RVIKTPEEIAVMR--YVCKVSSDAHKQVMLYAKPGRM 637
            +    E     R       SS AH + +  +  GR+
Sbjct: 721 CMAFQKEGTPPFRPHITIIASSKAHNERLYKSDKGRI 757


>AF047657-8|AAK18944.1|  328|Caenorhabditis elegans Hypothetical
           protein F37B4.10 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 507 DSLSTLNSSIPLKMASRAVKPLSVFGPDNVSNVSG 403
           +SL    + +P+ M S A  PL+ F PD V N +G
Sbjct: 172 ESLQIKANIMPVSMPSTADGPLNRFSPDLVENDAG 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,451,397
Number of Sequences: 27780
Number of extensions: 378212
Number of successful extensions: 934
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)