Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15l22f
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    26   2.6  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   3.4  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   3.4  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    25   4.5  

>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 222 KNGSAYDVNY*GSEKSHDPEEVFLQIIKYKSK*YKGFLYAPTTITIYYV 76
           KN    +VN  G +K   PEE+   I+    +  + +L  P T  +  V
Sbjct: 129 KNRPLVEVNVGGKKKKFTPEEISAMILSKMKQTAEAYLGKPVTHAVVTV 177


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 279 GNNGGKHCSFSPVVLREFNGRKHYIKVDCRRH 374
           G++    C    +V+   NGR+ Y++   RRH
Sbjct: 485 GHHKNPKCRAKKLVVESRNGRREYVQDAVRRH 516


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 210 AYDVNY*GSEKSHDPEEVFLQIIKYKSK*YKGFL 109
           AYD N     K+H  +EVFL ++ Y    +K FL
Sbjct: 30  AYDSNE--ESKTHLLQEVFLSLLNYNEDNWKYFL 61


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 252 HDWDQKPSHAKNGSAYDVNY*GSEK 178
           HD  ++PSH K+ SA  ++   S K
Sbjct: 229 HDHGERPSHVKDASAQHIDLLSSTK 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,456
Number of Sequences: 5004
Number of extensions: 39885
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)