Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15l22f
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112... 29 2.0
01_05_0390 - 21720118-21720573,21720667-21721296,21721427-217217... 29 2.6
03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501... 28 3.4
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 28 4.5
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987... 28 4.5
10_07_0162 - 13713504-13714754,13716445-13716522 27 6.0
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614... 27 6.0
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 27 7.9
07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448 27 7.9
04_03_0314 - 14238620-14240128 27 7.9
>02_05_0075 -
25610386-25610508,25610529-25610583,25610801-25611240,
25612951-25613619,25614551-25615870
Length = 868
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 287 WREALQLQPSRITGI*WPEALYQS*LPPP**HQLHKFVKNR 409
W EAL L P + G P +LYQ L P +L++ V+ R
Sbjct: 192 WSEALNLSPPGVRGGALPPSLYQHLLRAPGPPKLYRGVRQR 232
>01_05_0390 -
21720118-21720573,21720667-21721296,21721427-21721749,
21721844-21721973
Length = 512
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 121 ILFAFIFNYLQEHLLGIMGFFTALIVNIVGGAVLCMGGFLIP 246
ILFA + NY + + G G+ +L + V ++ +G L+P
Sbjct: 181 ILFANLINYFTDKIAGGWGWRVSLGLAAVPAVIMTVGSILLP 222
>03_05_0923 +
28848925-28849272,28849636-28849869,28849965-28850131,
28850433-28850651,28850743-28850929,28851012-28851063,
28851158-28851387,28851619-28851717,28851835-28852565,
28853004-28853519,28854140-28854398
Length = 1013
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 94 SSRGIKKTLILFAFIFNYLQEHLLGIMGFFTALIVNIVGGAV 219
SS+ +K + L ++ + E LLG G F +I N+VG ++
Sbjct: 470 SSKSREKGIELAVYVSERVPEILLGDPGRFRQIITNLVGNSI 511
>03_02_0999 -
13105030-13105434,13105716-13105850,13105933-13106133,
13106374-13106673,13106764-13106964,13107246-13107410,
13107484-13107663,13108171-13108212,13108327-13108404
Length = 568
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 130 AFIFNYLQEHLLGIMGFFTALIVNIVGGAVLCMGGFLI 243
A +F+YL+ + I TAL+ +VG ++ GG L+
Sbjct: 268 AQLFDYLRSRMNTIAPNLTALVGELVGARLIAHGGSLV 305
>03_02_0998 -
13097675-13098079,13098307-13098441,13098522-13098722,
13099060-13099359,13099449-13099649,13099932-13100096,
13100170-13100349,13100896-13100937,13101040-13101117
Length = 568
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 130 AFIFNYLQEHLLGIMGFFTALIVNIVGGAVLCMGGFLI 243
A +F+YL+ + I TAL+ +VG ++ GG L+
Sbjct: 268 AQLFDYLRSRMNTIAPNLTALVGELVGARLIAHGGSLV 305
>10_07_0162 - 13713504-13714754,13716445-13716522
Length = 442
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 231 RVFDPNRGTSARLQRIGNNGGKHCSFSPVVLREFNGR 341
RV+DPN GT A+ ++ G +F L NG+
Sbjct: 339 RVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGK 375
>06_03_1119 +
27760412-27760527,27760851-27761010,27761283-27761449,
27761525-27761629,27762097-27762864,27762942-27763131,
27763763-27763940,27764106-27764497
Length = 691
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 442 LNPECIDEQQLSVFDKLMELVLSW--RRQSTLI*CFRPLNSRNTTGLKL 302
+NP CI +QL + + L+ +W R S I FR L+ N+ KL
Sbjct: 396 VNPSCICFEQLKITNSLVHKESNWHLERLSDEIDLFRELHDDNSKFAKL 444
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -3
Query: 299 MLPAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNPMIP 165
M PA++P +L + + PP+ T PP ++ P+ P
Sbjct: 26 MPPAVVPPSLPTTTPPAPTVVAPPLPTTPPPAVVAPSPPLPPLTP 70
>07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448
Length = 333
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = -2
Query: 306 SCNASRHYSRCAEA-EQRCHDWDQKPSHAKNGSAYDVNY*GSEKSHDPEEV 157
S N R Y RC +Q C Q + N S + ++Y G DP +
Sbjct: 138 SPNNPRSYYRCTHRPDQGCMATKQVQTSESNSSEFVISYYGEHTCSDPSTI 188
>04_03_0314 - 14238620-14240128
Length = 502
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -3
Query: 311 AEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNP 174
+ ++ L + P + P R + + NPP APPT +R P
Sbjct: 6 SSSSSLSFLSPQPIHPRR---VRLPNPPPSTAAPPTPTAVRCTPAP 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,189,913
Number of Sequences: 37544
Number of extensions: 273710
Number of successful extensions: 600
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -