Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15l18r
         (940 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    27   0.19 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    27   0.32 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.3  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    25   1.3  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    25   1.3  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    24   2.3  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    24   2.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   2.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   2.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   7.0  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   7.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   9.2  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 27.5 bits (58), Expect = 0.19
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = -1

Query: 646 WAPAEYGLILACCSSDGSI---SIIQYSQDTGNWDVKKITGAHAIGVNSISWCP 494
           W P EYG +        +I    I+ Y+   GN++V  +T A       +SW P
Sbjct: 97  WNPEEYGGVEMLYVPSENIWLPDIVLYNNADGNYEVTLMTKATLKYTGDVSWKP 150


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
 Frame = -1

Query: 673 HESSVNSVAWAPAEYGLILACCSSDGSI---SIIQYSQDTGNWDVKKITGAHAIGVNSIS 503
           HE   +   W PAEYG +         I    I+ Y+   G + V  +T A       + 
Sbjct: 75  HEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVL 134

Query: 502 WCP 494
           W P
Sbjct: 135 WTP 137


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
 Frame = -1

Query: 646 WAPAEYGLILACCSSDGSI---SIIQYSQDTGNWDVKKITGAHAIGVNSISWCP 494
           W P EYG +         I    I+ Y+   GN++V  +T A       + W P
Sbjct: 92  WEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNYEVTLMTKATVYYSGLVVWQP 145


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 934 DMIHDAELDYYGLKLATCSSDNSVKIYDIKNGTQTLAADL 815
           D + +      G  L T  SDN  KIY++    Q  A D+
Sbjct: 101 DQLQERAQSVMGKCLPTSGSDNCNKIYNLAKCVQESAPDV 140


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 934 DMIHDAELDYYGLKLATCSSDNSVKIYDIKNGTQTLAADL 815
           D + +      G  L T  SDN  KIY++    Q  A D+
Sbjct: 101 DQLQERAQSVMGKCLPTSGSDNCNKIYNLAKCVQESAPDV 140


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 694 KLYEYTGHESSVNSVAWA 641
           K+Y ++GHES++ SV  A
Sbjct: 250 KIYLFSGHESNIASVLHA 267


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 694 KLYEYTGHESSVNSVAWA 641
           K+Y ++GHES++ SV  A
Sbjct: 265 KIYLFSGHESNIASVLHA 282


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 111 VLSRQRLTLLSPPDTAKMLPVRD 179
           VLSR  LTL     T+K LP+ D
Sbjct: 291 VLSRMNLTLAKMEKTSKPLPMVD 313


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 490 LSADLNLDPLTNKDAPKRLVTGGCDNLIKIWREQGDQWVEENR 362
           LS   +L+    KD P+         L+K WR+  D + EEN+
Sbjct: 254 LSLHASLNHTLTKDQPETY------ELVKEWRDFVDNYAEENK 290


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 40  CFFHHWVFGPNLWQLH 87
           C++  WV GP   Q++
Sbjct: 113 CYYETWVLGPLFCQIY 128


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 40  CFFHHWVFGPNLWQLH 87
           C++  WV GP   Q++
Sbjct: 79  CYYETWVLGPLFCQIY 94


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
 Frame = -1

Query: 646 WAPAEYGLILACCSSDGSI---SIIQYSQDTGNWDVKKITGAHAIGVNSISWCP 494
           W P +YG +         I    I+ Y+   GN++V  +T A       + W P
Sbjct: 84  WNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHHTGKVVWKP 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 281,561
Number of Sequences: 438
Number of extensions: 6671
Number of successful extensions: 21
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)