Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15l17f
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 334 5e-93
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 75 9e-15
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 48 1e-06
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 28 1.4
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch... 27 3.1
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 5.5
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 5.5
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 7.3
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 25 7.3
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 25 7.3
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 25 7.3
SPCC1450.05c |rox3|med19|RNA polymerase II holoenzyme mediator c... 25 9.6
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 334 bits (822), Expect = 5e-93
Identities = 156/219 (71%), Positives = 190/219 (86%)
Frame = +1
Query: 1 ILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVV 180
I GA +A + E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNLE D VG V+
Sbjct: 44 IRGAYNQAQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNLEADTVGCVL 103
Query: 181 FGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPG 360
FGND+L++EG++VKRT IVDVPVGE +LGRVVDALGNPIDGKGPI T R RV +KAPG
Sbjct: 104 FGNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPIKTTERRRVQLKAPG 163
Query: 361 IIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKGEDE 540
I+PR SV EPMQTG+KA+DS+VPIGRGQRELIIGDRQTGKTA+A+DTI+N +R+N DE
Sbjct: 164 ILPRTSVCEPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAIALDTILNHKRWNNSSDE 223
Query: 541 KKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSA 657
KKLYC+YVA+GQKRSTVAQ+V++L + ++ Y+IIV+A
Sbjct: 224 SKKLYCVYVAVGQKRSTVAQLVQKLEENDSLKYSIIVAA 262
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 74.9 bits (176), Expect = 9e-15
Identities = 42/154 (27%), Positives = 75/154 (48%)
Frame = +1
Query: 172 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 351
+ + G + L++ G V TG+ + +PVG LGR+++ +G P+D +GPI +
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHAD 166
Query: 352 APGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKG 531
AP + + E ++TGIK VD L P RG + + G GKT + I N + + G
Sbjct: 167 APSFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGG 226
Query: 532 EDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAI 633
Y ++ +G++ + + + + G I
Sbjct: 227 -------YSVFTGVGERTREGNDLYREMQETGVI 253
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 48.0 bits (109), Expect = 1e-06
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Frame = +1
Query: 226 TGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIP--RVSVREPMQT 399
TG + +PV E +LGRV + G PID KGP + + + I I P R+ E +QT
Sbjct: 92 TGHSMRIPVSEDMLGRVFNGSGLPID-KGP-NLLAEDYLDINGSPINPYARIYPEEMIQT 149
Query: 400 GIKAVDSLVPIGRGQR 447
GI ++D L I RGQ+
Sbjct: 150 GISSIDGLNSIARGQK 165
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 477 TSLTVTNDQLTLTTANWYQRVNSLDTSLHRLTHRHPGNDT 358
TS ++ L + N QR++SLD+S HPGN T
Sbjct: 154 TSDAYSSSILENSPPNKVQRLSSLDSSQDSFQEEHPGNVT 193
>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 333
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +1
Query: 298 IDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTG 477
+D K PI+T + G I V + E IK ++VPI + E + R
Sbjct: 125 VDHKVPIETTMKALKAFVDSGEISCVGLSEASAESIKRALAIVPIAAVETEYSLFSRDIE 184
Query: 478 KTALAIDT 501
K + +DT
Sbjct: 185 KNGI-LDT 191
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 112 PSPQPGCSSSHKHERYHHQCSRH-DQSLLDQPWAR 11
P P G HK ++ CS H D S+ ++P A+
Sbjct: 405 PVPHNGTKPDHKPWKHEEHCSCHEDHSVHERPSAK 439
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +1
Query: 325 KSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTI 504
KS + + IP V + + V + +G G +I+G R +GK+ L +D I
Sbjct: 537 KSTIAARLCGKSHIPLVGHMDEQTKLYQWVRQTIVLGEGNSVIIVGPRGSGKSVL-VDDI 595
Query: 505 INQ 513
+++
Sbjct: 596 LSR 598
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 258 LSDGNVYDSTSTLDNISFLDKLVIT 184
L GN+Y+STS + +S LD IT
Sbjct: 49 LEVGNIYNSTSASEILSTLDAKYIT 73
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 399 SLHRLTHRHPGNDTWRLNTDPHTGFR 322
SLH T H +D R N+DP + R
Sbjct: 428 SLHDSTTSHNKSDLMRTNSDPQSAMR 453
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 7.3
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 275 TRPRICSPTGTSTIAP 228
TRPR+ +P+ +ST+ P
Sbjct: 55 TRPRVSAPSSSSTVVP 70
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 596 ATVDLFCPMAT*MQYNFFFSSSPLLNLCWLMIVSMAR 486
AT CP++T M + PL LC L+IV+ AR
Sbjct: 583 ATDSTSCPVSTQMDDKWKILFVPLFTLC-LLIVNQAR 618
>SPCC1450.05c |rox3|med19|RNA polymerase II holoenzyme mediator
complex subunit Med19 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 138
Score = 25.0 bits (52), Expect = 9.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 235 IVDVPVGEQIL--GRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIP 369
I D+P +IL + L NPI + PID + V PGIIP
Sbjct: 59 IQDLPGYNEILRDNTIKQWLTNPIREEVPIDIEFLHHVFSVEPGIIP 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.139 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,804
Number of Sequences: 5004
Number of extensions: 54853
Number of successful extensions: 171
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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