Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15l12f
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    42   7e-05
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    28   1.3  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    26   5.2  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   9.1  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 22/82 (26%), Positives = 38/82 (46%)
 Frame = +2

Query: 278 AEFIGNLLLNLFGCGACVKISLESNSETDXXXXXXXXXXXXXXXXXXIGHISGGHLNPAV 457
           AEF+G L+L +FG G+ ++ ++ + +                      G ISGGH+NPAV
Sbjct: 315 AEFLGTLVLVVFGVGSNLQATVTNGAGGSFESLSFAWGFGCMLGVYIAGGISGGHVNPAV 374

Query: 458 TAGMLCTGRIKLIRAVLYVIVQ 523
           T  +    +    +  +Y+  Q
Sbjct: 375 TISLAIFRKFPWYKVPIYIFFQ 396


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 194 KVIMGELGTKLGLDELTGGAATISRALLAEFIGNLLLNLFGCG-ACVKISLES 349
           +V+M  LG K G  EL  G   ++RA  A    N+L +    G   +K S ES
Sbjct: 38  QVVMAGLGLKTGYQELYSGVENLTRADQASRCFNILQHHMSSGIQLLKDSAES 90


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 284 FIGNLLLNLFGCG 322
           F+GNL+LNL+ CG
Sbjct: 47  FLGNLVLNLWDCG 59


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 271 CSADRSGSSGQLVQSQFSTKLTHYDFLNRFGKQK 170
           C+ D   SS +     FS  + H DF N   +QK
Sbjct: 357 CNPDLYDSSDECYILTFSLMILHTDFFNIHNRQK 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,167
Number of Sequences: 5004
Number of extensions: 38589
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)