Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15l09f
         (361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   1.5  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    25   4.7  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   4.7  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    24   6.2  

>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 113 LFNKIPQNVQLLPVHRFKKTVKERLCNKAY 202
           +FN +P +     +H  K T+  RLC K++
Sbjct: 520 VFNDVPYSEIDSQLHTIKSTIAARLCGKSH 549


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = +2

Query: 35  RNKHRLALPAARIKKISNS---FRGLGVQLFNKIPQNVQLLPVHRFKKTVKERLCNKAYY 205
           R K++L + AAR KKI N     R  G++  +++  ++Q   +     +++ER  ++A  
Sbjct: 491 REKNKLTMLAARQKKIKNRPVLPRTAGIRTLDELQSSLQSAGLP--SDSIEERARSRART 548

Query: 206 KVKDFLLDGT 235
              + + DG+
Sbjct: 549 AAANEMADGS 558


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 110 QLFNKIPQNVQLLPVHRFKKTVKERLCNKAYYKVK 214
           ++ +K     ++LP+H    T ++R C K Y K K
Sbjct: 832 EIKSKDGSKFEVLPLHASLNTSEQRRCFKTYTKRK 866


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 101 LGVQLFNKIPQNVQLLPVHRFKKTVKERLCN 193
           +G    N+I      +PV R K T KERL N
Sbjct: 547 VGPDQINEIVARWTGIPVTRLKTTEKERLLN 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,067
Number of Sequences: 5004
Number of extensions: 22534
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)