Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15l09f
         (361 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0760 + 27017956-27018433,27018487-27019234,27023760-270243...    30   0.63 
11_01_0758 + 6362500-6363233,6363709-6365500                           27   3.4  
08_01_0628 - 5460030-5462960                                           27   4.4  
11_06_0062 + 19709801-19710832,19712383-19712568,19712661-197128...    26   7.7  
03_01_0480 - 3676529-3676687,3676767-3676931,3677044-3677220,367...    26   7.7  

>11_06_0760 +
           27017956-27018433,27018487-27019234,27023760-27024378,
           27030755-27032440
          Length = 1176

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 101 LGVQLFNKIPQ-NVQLLPVHRFKKTVKERLCNKAYYKVKDFLLDGTTWE 244
           + +Q  NK  + N+Q +      K ++E L  K Y+ + D +   TTWE
Sbjct: 376 INIQTMNKPGEKNIQTMKRDGLSKLLQEHLNQKRYFLLIDDVWSATTWE 424


>11_01_0758 + 6362500-6363233,6363709-6365500
          Length = 841

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +2

Query: 131 QNVQLLPVHRFKKTVKERLCNKAYYKVKDFLLDGTTWE*GVRSWP 265
           Q  ++  VH   + +++ L +K Y+ + + L D + W+   R++P
Sbjct: 223 QQPEVCEVHNLLEDLRKHLLDKRYFIIVEDLWDTSVWDVVSRAFP 267


>08_01_0628 - 5460030-5462960
          Length = 976

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 173 VKERLCNKAYYKVKDFLLDGTTWE*GVRSWP 265
           ++ERL NK Y  V D + D T W+   R+ P
Sbjct: 302 LRERLANKRYLIVLDDVWDETLWDGLERAMP 332


>11_06_0062 +
           19709801-19710832,19712383-19712568,19712661-19712867,
           19712940-19713078,19713172-19713380,19713520-19714134
          Length = 795

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 107 VQLFNKIPQNVQLLPVHRFKKTVKERLCNKAYYKVKD 217
           +++F K PQ    LP+ +F + V+E +    ++   D
Sbjct: 612 MEVFRKDPQEPHFLPLQQFPEAVRENMAIGLFWSYID 648


>03_01_0480 -
           3676529-3676687,3676767-3676931,3677044-3677220,
           3678170-3678273,3678700-3678843,3679831-3679898,
           3680059-3680162,3680759-3680767,3681572-3681657,
           3681918-3683373
          Length = 823

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
 Frame = +2

Query: 134 NVQLLPVHRFKKTVKERLCN-----KAYYKVKDFL 223
           NV +LP+ RF +  + R+C+        YK+KD L
Sbjct: 745 NVHVLPMFRFYRGAEGRICSFSCTISTIYKIKDAL 779


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,360,211
Number of Sequences: 37544
Number of extensions: 144314
Number of successful extensions: 224
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)