Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15l07f
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1170 - 26663491-26663602,26663999-26664104,26664613-266648...    29   1.5  
09_02_0510 + 10076279-10076580,10076696-10076830,10077254-10077902     29   2.0  
04_01_0039 + 455760-457631                                             27   4.6  
03_06_0251 + 32654223-32654423,32655275-32655589                       27   4.6  
03_01_0593 + 4379263-4379377,4380359-4380491,4380585-4380656,438...    27   4.6  
12_02_0903 - 24179533-24180120                                         27   8.1  
08_02_0222 + 14446967-14448310                                         27   8.1  

>12_02_1170 -
           26663491-26663602,26663999-26664104,26664613-26664816,
           26664914-26665076,26665196-26665317,26665702-26665969
          Length = 324

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -3

Query: 357 GNIFSFR-FTPCV*ASLLGRPASSPHRYPCTFYCLHRSSRNCMLQEHPDQ 211
           GN+  FR   PC    +LG P S+     CT+Y     SR+ +     DQ
Sbjct: 211 GNMHRFRAIAPCAILDILGPPYSTEDGRDCTYYRAIPYSRHSVKNGAADQ 260


>09_02_0510 + 10076279-10076580,10076696-10076830,10077254-10077902
          Length = 361

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 282 RYPCTFY-CLHRSSRNCMLQEHPDQYQQDLSLLRQKFQGSRSIPVELAVQAIFSKPQ 115
           ++P  +Y C HR S+ CM  +   +  +D ++    + G  +  V  AV A   KP+
Sbjct: 143 KHPRGYYRCTHRHSQGCMATKQVQRTDEDATVFDVIYHGEHTC-VHKAVAAGAGKPE 198


>04_01_0039 + 455760-457631
          Length = 623

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 353 IYLVSGLLLAY-KLHSWVVRPHHHIGTLVPS 264
           IY V+G L    KLH W+   H+H+G+++P+
Sbjct: 236 IYEVAGKLKKMGKLH-WLKLLHYHVGSMIPT 265


>03_06_0251 + 32654223-32654423,32655275-32655589
          Length = 171

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 300 PASSPHRYPCTFYCLHRSSRNCMLQEHPDQ 211
           PAS PHRY C        +   MLQ+ P Q
Sbjct: 43  PASDPHRYACVQRVFGAGNTARMLQQLPVQ 72


>03_01_0593 +
           4379263-4379377,4380359-4380491,4380585-4380656,
           4380739-4380813,4380896-4380967,4381055-4381126,
           4381251-4381322,4381403-4381468,4381547-4381612,
           4381689-4381978,4382072-4382355,4382690-4382961,
           4383411-4383546,4383840-4383970,4384078-4384234,
           4384334-4384477
          Length = 718

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = -3

Query: 267 FYCLHRSSRNCMLQEHPDQYQQDLSLLRQKFQGSRSIPVELAVQAIFSKPQPFIYACRP 91
           F+ + R  R   L+EH +Q+Q   S    + +  + I     +  + S P P  ++ +P
Sbjct: 313 FFVIRRRKRRAALEEHFEQHQPFTSFPSNEVKDMKPIEESTTID-VESLPSPASFSLKP 370


>12_02_0903 - 24179533-24180120
          Length = 195

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/48 (22%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 303 RPASSPHR-YPCTFYCLHRSSRNCMLQEHPDQYQQDLSLLRQKFQGSR 163
           +P+S+PH+ + C F C+ +   +  L  H + ++++ S  ++ +   R
Sbjct: 63  KPSSAPHKVFSCNF-CMRKFFSSQALGGHQNAHKRERSAAKRSYHAQR 109


>08_02_0222 + 14446967-14448310
          Length = 447

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 264 YCLHRSSRNCMLQEHPDQYQQDLSLLRQKFQG--SRSIPVELAVQAIFSKPQP 112
           YC H   ++C+L   P+Q+ Q+L     + QG      P++   QA+F   +P
Sbjct: 303 YCHHDDQQDCVL---PEQHSQELHGYNNEEQGYLLPPEPIDQEEQALFVGGEP 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,622,221
Number of Sequences: 37544
Number of extensions: 200109
Number of successful extensions: 407
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)