Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15l06f
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 31 0.20
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.46
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 28 1.4
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 28 1.4
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 27 2.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 3.3
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 26 5.7
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ... 26 5.7
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 7.5
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 25 7.5
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 7.5
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 9.9
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe... 25 9.9
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 30.7 bits (66), Expect = 0.20
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 292 RYFADIPASTTKSLISSPTVAESLLQDHVDECSVNF 399
+Y+ P+ +T+ L S +VAES+ D CS NF
Sbjct: 537 KYWCPSPSLSTEDLFESFSVAESVTSTDEDICSTNF 572
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 29.5 bits (63), Expect = 0.46
Identities = 18/86 (20%), Positives = 43/86 (50%)
Frame = +1
Query: 127 LHLGKLIKNAPDKIKMTWNIINRETGNVRNSNAESILKINDKIITSHQEVASAFERYFAD 306
L + K + A K + + ++RE+ + N E N +++ + ++++++
Sbjct: 16 LEVKKKKRQAKSKNSVAEDNVDRESNDGNNQVNEPTGNDNTQVVENTEDISASNVVSAEG 75
Query: 307 IPASTTKSLISSPTVAESLLQDHVDE 384
AST + SP +E+++++ VDE
Sbjct: 76 AEASTGDASTQSPETSENVVKNSVDE 101
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 214 NSNAESILKINDKIITSHQEVASA--FERYFADIPASTTKSLISSPTVAESLLQDHVDEC 387
+SN K D+I+ + + ASA FE ++ TTK++ SP ++ + D V +
Sbjct: 174 SSNILEHAKDYDRIVLVYNKFASAVSFETVMKNL--YTTKAINESPNLSAYEVSDEVHQP 231
Query: 388 SVNFKFTN 411
+ F F N
Sbjct: 232 LMEFAFAN 239
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 20 YMTFIMKNPIIIISHFMSMSVNIPSFLKKSVHW 118
+ FI N +++I H +SVN K V W
Sbjct: 179 FSNFISSNTVLLIPHLTQLSVNGCGLNSKDVQW 211
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 193 RETGNVRNSNAESILKINDKIITSHQEVASAFERYFADIPASTTKSLISS 342
R N+ ++ + + ++ + + ++ AS+ + IP+S TKS ISS
Sbjct: 195 RPFSNLPSNKSSPVKHVSPNVKNNSKKTASSVNSNHSSIPSSITKSNISS 244
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +1
Query: 241 INDKIITSHQEVASAFERYFADIPASTTKSLISSPTVAESLLQDHVDECSVNFKFTNIAI 420
+NDK+++ HQE A + S S +S + + LQ V S F +N+
Sbjct: 216 VNDKLLSLHQE---------ASLEKSQLSSQLSDAVLEKDALQRKVSSLSQQFTESNLRY 266
Query: 421 KDII 432
++I+
Sbjct: 267 QNIV 270
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 5.7
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +1
Query: 1 HKSRQR-LYDLYHEKSYNHNKSFHEYVCKYSKLFKKVC--TLAKSLHLGKLIKNAPDKIK 171
H+ + LY+ +E KS + Y+ + FKK C T+ L KL+ +K
Sbjct: 220 HRDEMKTLYNCLYELIDRDKKSIYNYLRRKYNPFKKKCKWTIEDEAELKKLV----EKHG 275
Query: 172 MTWNIINR 195
+W++I +
Sbjct: 276 TSWSLIGK 283
>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 25.8 bits (54), Expect = 5.7
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +1
Query: 292 RYFADIPASTTKSLISSPTVAESLLQDHVDECSVNFKFTNIAIKDIIDNFKTINIKKTGD 471
R FA+ + SL P V E LL+ H D+ F N K ++F +N+++
Sbjct: 147 RSFAEQSSRDPSSLPKGPVVIEGLLRQHTDK--PRFMMKNEPEK---NSFYFLNVREFAQ 201
Query: 472 LWG 480
L G
Sbjct: 202 LKG 204
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 178 WNIINRETGNVRNSNAESILKINDKIITS 264
WN+ RE + S L+INDK +TS
Sbjct: 414 WNLEQREEPGIETVLDFSKLRINDKTMTS 442
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 25.4 bits (53), Expect = 7.5
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +1
Query: 4 KSRQRLYDLYHEKSYNHNKSFHEYVCKYSKLFKKVCTLAKSLHLGKLIKNAPDKIKMTWN 183
K+ L ++KS+ KS ++C SKL + + S L L+ +IK
Sbjct: 465 KNENILLSQRNDKSFL--KSLKSFLCSISKLENRYLSNGHSATLSDLLLGILSEIKYYEY 522
Query: 184 II--NRETGNVRNSNAESILKINDKI 255
++ N+ET + N +++ +D I
Sbjct: 523 LVRKNKETVEEKWENVMELVQQSDNI 548
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 394 NFKFTNIAIKDIIDNFKTIN--IKKTGD 471
NFK +I +KD +D+FK N IK GD
Sbjct: 843 NFK-PDITLKDYVDSFKPTNTVIKPLGD 869
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 271 EVASAFERYFADIPASTTKSLISSPTVAES 360
E+ SA R I A TTKSL+ AES
Sbjct: 1145 EIISAVVRRSVGIAAITTKSLLQKDFAAES 1174
>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1
Query: 178 WNIINRETGNVRNSNAESILKINDKIITSHQ---EVASAFERYFADIPASTTKSLISSPT 348
W+I+ R+ GN+ I ++ +++ + +V E +S+ S +SS T
Sbjct: 12 WSIVYRQLGNLLEQYEVEIARLKSQLVLEKKLRIQVEKELESVKTKQISSSASSKVSSNT 71
Query: 349 VAE 357
+ E
Sbjct: 72 IQE 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,334
Number of Sequences: 5004
Number of extensions: 51554
Number of successful extensions: 186
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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