Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15l06f
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544...    30   1.9  
03_06_0570 - 34794678-34795115,34795339-34795920,34796008-347961...    30   1.9  
04_03_0849 + 20265511-20265984,20266452-20266617,20266694-202669...    28   5.9  
06_02_0178 + 12652654-12652877,12652964-12653140,12653141-126532...    28   7.8  

>04_04_0137 -
           23053148-23053798,23053911-23054146,23054268-23054458,
           23054587-23056010
          Length = 833

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +1

Query: 121 KSLHLGKLIKNAPDKIKMTWNIINRETGNVRNSNAESILKINDKIITSHQEVAS 282
           K LH  K ++ AP++ +M W+ I   +  +     ES+   N +  T H+EV S
Sbjct: 449 KPLHWDK-VRAAPNR-RMVWDRIRSSSFELDEKMIESLFGYNARCSTKHEEVQS 500


>03_06_0570 -
           34794678-34795115,34795339-34795920,34796008-34796146,
           34796261-34796402,34796504-34796621,34796713-34796820,
           34796894-34796968,34797774-34798003,34798086-34798388,
           34798949-34799130,34800288-34800371,34800799-34801391
          Length = 997

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
 Frame = +1

Query: 199 TGNVRNSNAESILKIN-DKIITSHQEVASAFERYFADIPASTTKSLI----SSPTVAESL 363
           +GN  +++A+S+   N D    + + V   FE+  +D+P      ++    SSPT  ES 
Sbjct: 445 SGNSDSTSAQSLSSSNGDAQCRTDKIVFKLFEKVPSDLPPVLRSQILGWLSSSPTDIESY 504

Query: 364 LQDHVDECSVNFKFTNIAIKDIIDNF-----KTINIKKTGDLW 477
           ++      +V  +    A K++ DN      K +N   TG+ W
Sbjct: 505 IRPGCIILTVYLRLVESAWKELSDNMSSYLDKLLN-SSTGNFW 546


>04_03_0849 +
           20265511-20265984,20266452-20266617,20266694-20266905,
           20267154-20267647,20267732-20267780,20267922-20268251
          Length = 574

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +1

Query: 73  YVCKYSKLFKKVCTLAKSLHLGKLIKNAPDKIKMTWNIINRETGNVRN 216
           ++ K S+LF+   T+A  L   +L++N PDK ++ WN  + E  N  N
Sbjct: 506 FIGKQSRLFQ-TWTIAGFLVAKQLLEN-PDKSRILWNNEDEEILNAMN 551


>06_02_0178 +
           12652654-12652877,12652964-12653140,12653141-12653214,
           12653424-12653530,12653637-12653792,12653933-12654019,
           12654247-12654344,12654467-12654554,12654810-12654911
          Length = 370

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 292 RYFADIPASTTKSLI-SSPTVAESLLQDHVDECS-VNFKFTNIAIKDIIDNFKT 447
           RY   IP  T   ++   P   E   Q  +DE + V+ +FT +A++D+ D +KT
Sbjct: 306 RYGTPIPFPTPMHVVVGRPIEVEKNSQPTIDEINEVHEQFT-VALQDLFDKYKT 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,267,886
Number of Sequences: 37544
Number of extensions: 259990
Number of successful extensions: 639
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)