Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15l03f
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    35   0.008
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   5.2  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   5.2  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    26   5.2  
SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subun...    25   6.8  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    25   6.8  
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi...    25   6.8  
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    25   6.8  

>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 522 QELDVRMLIHQSRAGCVIGKAGSKIKELREKTGAR 626
           Q+L +R L+    AG +IGKAG  + ELR  T  +
Sbjct: 92  QQLTLRALLSTREAGIIIGKAGKNVAELRSTTNVK 126



 Score = 33.1 bits (72), Expect = 0.034
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +3

Query: 564 GCVIGKAGSKIKELREKTGARL 629
           GC+IG+ GSKI E+R  +G+++
Sbjct: 333 GCIIGRGGSKISEIRRTSGSKI 354


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 434 FSCYGEYPFGAGAIWDCYRGF 372
           F CY E P G  AI  C + F
Sbjct: 293 FLCYSEKPNGINAIMKCMKNF 313


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 116 LNVYCLCFSALVSFKRSI 169
           L VYC  F  LVS+KRS+
Sbjct: 521 LAVYCDTFDVLVSYKRSL 538


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = -1

Query: 199 SSYDYPGSH---LY*SFERH*STKA 134
           SSY YP SH    Y SF+RH S+ +
Sbjct: 158 SSYSYPSSHQDPAYSSFKRHRSSNS 182


>SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subunit
           Rpc37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 326 NRKRWQQYIKAQKPVQSLYNSPRLPRPRTGTL 421
           N  +  +Y   +KP+Q+   S RL +PRT  +
Sbjct: 88  NEDKAMKYGNGKKPIQTQTLSGRLQKPRTNLM 119


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 311 GGWVDNRKRWQQYIKAQKPVQSLYNSPRLP 400
           GG +D  + W Q  +A+   Q  Y   R+P
Sbjct: 292 GGCIDREEEWIQQFQARCIKQYFYGDDRMP 321


>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
           Spa1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = -3

Query: 425 YGEYPFGAGAIWDCYRGFVLASEL*YIAATFSDYRPSHLARYQEGDFIVCLPVP 264
           YG  P G GA W C      A E     A F   R  H+ R+    F  CLP P
Sbjct: 55  YGSTPAG-GAEW-CSE----ALERSRPRAAFKQQRRRHVPRWISDSFRTCLPKP 102


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 298 RKVTSSSVCRCRFWAGPSSPYASRFILMPNKVQSSYDYPG 179
           + V S +    + W+ PS+P A ++ +      +SY Y G
Sbjct: 38  KAVPSETAAEVKEWSMPSAPTAPKYDVDFTSALNSYKYEG 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,347
Number of Sequences: 5004
Number of extensions: 48471
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)