Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15k08r
(912 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 25 1.3
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 25 1.3
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 24 1.7
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 23 2.9
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 23 2.9
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 5.1
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 23 5.1
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 22 8.9
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 22 8.9
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 22 8.9
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 22 8.9
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 22 8.9
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 24.6 bits (51), Expect = 1.3
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -2
Query: 848 YNLLNEYASKLYPDLD-VEQVP-PSAVP 771
YN N Y KLY +++ +EQ+P P VP
Sbjct: 96 YNNNNNYNKKLYYNINYIEQIPVPVPVP 123
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 24.6 bits (51), Expect = 1.3
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -2
Query: 848 YNLLNEYASKLYPDLD-VEQVP-PSAVP 771
YN N Y KLY +++ +EQ+P P VP
Sbjct: 334 YNNNNNYNKKLYYNINYIEQIPVPVPVP 361
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 24.2 bits (50), Expect = 1.7
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -2
Query: 848 YNLLNEYASKLYPDLD-VEQVP-PSAVP 771
YN N Y KLY +++ +EQ+P P VP
Sbjct: 96 YNNDNNYNKKLYYNINYIEQIPVPVPVP 123
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 23.4 bits (48), Expect = 2.9
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +3
Query: 237 NNTQQAHSFNNFNYN 281
NN +++NN+NYN
Sbjct: 93 NNNYNNNNYNNYNYN 107
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 23.4 bits (48), Expect = 2.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 582 RGTDHRHYKRPNRYTNSENQTCDATASNNDY 490
R TD RHY R ++EN + ++ D+
Sbjct: 169 RATDSRHYDRYKEEESNENYNWEHKETHIDW 199
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.6 bits (46), Expect = 5.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 549 NRYTNSENQTCDATASNNDYL*SKPSGHNGKRWKTF 442
N +NS++Q ++ + + S+ SG+ G+R TF
Sbjct: 19 NTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTF 54
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 22.6 bits (46), Expect = 5.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 549 NRYTNSENQTCDATASNNDYL*SKPSGHNGKRWKTF 442
N +NS++Q ++ + + S+ SG+ G+R TF
Sbjct: 19 NTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTF 54
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 21.8 bits (44), Expect = 8.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 237 NNTQQAHSFNNFNYN 281
NN +++NN NYN
Sbjct: 92 NNNNYKYNYNNNNYN 106
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 8.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 237 NNTQQAHSFNNFNYN 281
NN +++NN NYN
Sbjct: 92 NNNNYKYNYNNNNYN 106
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 8.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 237 NNTQQAHSFNNFNYN 281
NN +++NN NYN
Sbjct: 92 NNNNYKYNYNNNNYN 106
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 8.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 237 NNTQQAHSFNNFNYN 281
NN +++NN NYN
Sbjct: 92 NNNNYKYNYNNNNYN 106
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.8 bits (44), Expect = 8.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 237 NNTQQAHSFNNFNYN 281
NN +++NN NYN
Sbjct: 325 NNNNYKYNYNNNNYN 339
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,533
Number of Sequences: 438
Number of extensions: 5230
Number of successful extensions: 21
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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