Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15k08f
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    25   0.77 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   0.77 
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    24   1.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.1  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +2

Query: 266 YNLLNEYASKLYPDLD-VEQVP-PSAVP 343
           YN  N Y  KLY +++ +EQ+P P  VP
Sbjct: 96  YNNNNNYNKKLYYNINYIEQIPVPVPVP 123


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +2

Query: 266 YNLLNEYASKLYPDLD-VEQVP-PSAVP 343
           YN  N Y  KLY +++ +EQ+P P  VP
Sbjct: 334 YNNNNNYNKKLYYNINYIEQIPVPVPVP 361


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +2

Query: 266 YNLLNEYASKLYPDLD-VEQVP-PSAVP 343
           YN  N Y  KLY +++ +EQ+P P  VP
Sbjct: 96  YNNDNNYNKKLYYNINYIEQIPVPVPVP 123


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 135 TWVTRGKRRNFTLGNEETNIS*NPASRASFARVTLEKKTAS 257
           +WV     RN+TL NE +      A+  SF   ++E+ + S
Sbjct: 274 SWVNTSVIRNYTLFNENSE-----AAARSFVPFSIERSSQS 309


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 532 RGTDHRHYKRPNRYTNSEN 588
           R TD RHY R     ++EN
Sbjct: 169 RATDSRHYDRYKEEESNEN 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,765
Number of Sequences: 438
Number of extensions: 2744
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)