Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15j19r
         (970 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   119   5e-29
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   1.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   5.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   5.5  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   9.6  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   9.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   9.6  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  119 bits (286), Expect = 5e-29
 Identities = 59/60 (98%), Positives = 59/60 (98%)
 Frame = -2

Query: 969 GAGLAVGFSGLAAXFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLY 790
           GAGLAVGFSGLAA FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLY
Sbjct: 95  GAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLY 154


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -3

Query: 677 PPCIGFRS--TLPLLYITFV---PCSFSHISRPVQPCCCGCSASRDVNLYIFT 534
           PP +G++   + P   +TF    P + + I  PV+PC   C  + D    +++
Sbjct: 199 PPLVGWKDKRSHPAYNMTFAQNGPFNTTTIFVPVKPCPWICELTNDAGYVVYS 251


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 870 LFVGMI-LILIFAEVLGLYGLIVAIY 796
           L VG + LILIF  V G   + VAIY
Sbjct: 26  LLVGFLFLILIFLSVAGNILVCVAIY 51


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 879 AEQYHARLHLPRCLWRNXQPDQRILQPNQP 968
           A+Q H + H    +++  Q  Q   Q +QP
Sbjct: 190 AQQQHLQAHEQHMMYQQQQQSQAASQQSQP 219


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 259 YFNIIYETVEPPGYSVPVSCG 197
           Y+NI Y    P    VPV CG
Sbjct: 109 YYNINYIEQIPVPVPVPVYCG 129


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 259 YFNIIYETVEPPGYSVPVSCG 197
           Y+NI Y    P    VP+ CG
Sbjct: 108 YYNINYIEQVPVPIPVPIYCG 128


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 787 CVQVDGDDKSVKTQYFSENKNKNHSD 864
           C+  D   +S+ TQ+    +++ HSD
Sbjct: 328 CLDCDEIRESLDTQFLQVCRSRRHSD 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 271,499
Number of Sequences: 438
Number of extensions: 5672
Number of successful extensions: 46
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31927896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)