Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15j13f
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    57   2e-09
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    30   0.30 
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    27   2.1  
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||...    26   4.9  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   6.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.6  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 16/115 (13%)
 Frame = +3

Query: 297  DIIFRKVRGILNKLTPEKFQKXXXXXXXXXXXXX-----RVLKGVILLIFEKALDEPKYS 461
            +++ RKV+G LNK+T EKF K                  R LK VI L FEKA DEP +S
Sbjct: 1006 EVVQRKVKGSLNKMTLEKFDKISDQILEIAMQSRKENDGRTLKQVIQLTFEKATDEPNFS 1065

Query: 462  SMYAQLCKRLSEEA-----------PNFEPPGQPCTFKLLLLNKCRTEFENRTQA 593
            +MYA+  +++ +              N +P      F+  LL++C+ +FE   +A
Sbjct: 1066 NMYARFARKMMDSIDDSIRDEGVLDKNNQPVRGGLLFRKYLLSRCQEDFERGWKA 1120


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 25/84 (29%), Positives = 40/84 (47%)
 Frame = +1

Query: 268 TTCPTEMPSTTSYXXXXXXXXXXXXXXNFKS*AMISSGSNWTPTGSSRASSFSFLRKPWT 447
           TT P+   S++S               +  S +  SS S+ + + SS +SS S    P T
Sbjct: 152 TTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPIT 211

Query: 448 SLSTRRCTHSSASGSAKRLPTSSR 519
           S ++   +HSS+S S+    +SSR
Sbjct: 212 SSTSS--SHSSSSSSSSSSSSSSR 233


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 402 VLKGVILLIFEKALDEPKYSSMYAQLCKRLSEEAPNFE 515
           V  G I L F  ALD+     M++ LC++L E + NFE
Sbjct: 279 VANGEIFLTFN-ALDDVS-PEMHSDLCQQLIEASKNFE 314


>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 449 LVQGFLKNEKDDALEDPVGVQF 384
           L+Q F+KN+ DD +   VG+ F
Sbjct: 25  LLQRFVKNQWDDQVSHTVGIDF 46


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = +1

Query: 229  RGDAGSRPHHSDITTCPTEMPSTTSYXXXXXXXXXXXXXXNFKS*AMISSG 381
            R +AG RP    I T   E P+ T+Y              N K   ++ SG
Sbjct: 972  RTEAGIRPFVKQIDTVAAEFPAFTNYLYTTYNAVEHDIHFNDKGVMVLGSG 1022


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 556 LSNKSLNVHG*PGGSKLGASSLSRLQSCAYIDEY 455
           L N  +N++     ++L   +L+ +QSCA+ DE+
Sbjct: 59  LRNTEVNLYRNSSVNELKIEALTLIQSCAHRDEF 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,907,578
Number of Sequences: 5004
Number of extensions: 30702
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)